View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17130_low_2 (Length: 329)
Name: NF17130_low_2
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17130_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 8864512 - 8864411
Alignment:
| Q |
217 |
aaccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaagtatatgatctctctgcaaacctgaccaagaagctggagtaacca |
316 |
Q |
| |
|
||||||||||| |||||||||||||| || || | || ||||||||||| ||||||| |||| ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8864512 |
aaccatgaaatatcaaatccatataccaatgctttgtgcatgacatcataggaaagtacttgatttctttgcaaacctgaccaagaagttggagtaacca |
8864413 |
T |
|
| Q |
317 |
at |
318 |
Q |
| |
|
|| |
|
|
| T |
8864412 |
at |
8864411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 9136895 - 9136798
Alignment:
| Q |
217 |
aaccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaagtatatgatctctctgcaaacctgaccaagaagctggagtaac |
314 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||||||||||||| | ||||| |||| ||| |||||||| |||||||||| | ||||||| |
|
|
| T |
9136895 |
aaccatgaaacctcaaatccatacactaacgccttatgaatgacatcatatgtaagtaattgatttctttgcaaacccgaccaagaagttagagtaac |
9136798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 9093824 - 9093733
Alignment:
| Q |
219 |
ccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaagtatatgatctctctgcaaacctgaccaagaagctggag |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||| ||||||||| ||| |||| ||| |||||||||||||||||| ||||| |
|
|
| T |
9093824 |
ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggag |
9093733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 9100210 - 9100138
Alignment:
| Q |
219 |
ccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaagtatatgatctctctgcaaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||| ||| |||||| |
|
|
| T |
9100210 |
ccatgaaatctcaaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaa |
9100138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 8868768 - 8868709
Alignment:
| Q |
212 |
gacgcaaccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaa |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
8868768 |
gacgcaaccacgaaatctcaaatccatattctaacgccttgcgaataacatcataagaaa |
8868709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 8971848 - 8971912
Alignment:
| Q |
210 |
aagacgcaaccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaagta |
274 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
8971848 |
aagatgcatccatgaaatctcaaatccatagactaatgccttgtgaatgatatcataggaaagta |
8971912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 9006876 - 9006940
Alignment:
| Q |
210 |
aagacgcaaccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaagta |
274 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
9006876 |
aagatgcatccatgaaatctcaaatccatagactaatgccttgtgaatgatatcataggaaagta |
9006940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 9072680 - 9072640
Alignment:
| Q |
210 |
aagacgcaaccatgaaatctcaaatccatatactaacgcct |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
9072680 |
aagacgcaaccatgaaatctcaaatccatacactaatgcct |
9072640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 9065115 - 9065177
Alignment:
| Q |
210 |
aagacgcaaccatgaaatctcaaatccatatactaacgcctgatgaatgacatcataagaaag |
272 |
Q |
| |
|
|||| ||| |||||||| |||||||||||| |||||||||| |||||| ||||||| ||||| |
|
|
| T |
9065115 |
aagatgcagccatgaaacctcaaatccatagactaacgccttgtgaatggcatcataggaaag |
9065177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University