View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_high_10 (Length: 451)
Name: NF17131_high_10
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 38 - 436
Target Start/End: Complemental strand, 36848696 - 36848298
Alignment:
| Q |
38 |
cgctgagctgagcagcgctagcttgtgacccaagcggggcatgagccatgggactggagggtataaaatgaggctggtgaggacacaaaatacatgatac |
137 |
Q |
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| T |
36848696 |
cgctgagctgagcagcgctagcttgtgacccaagcggggcatgagccatgggactggagggtataacatgaggctggtgaggacacaaaatacatcatac |
36848597 |
T |
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| Q |
138 |
tcctaaaagtgaactattttatttcagtgagcaaaagatcagattatgagacatattgttcttactatgatgtaccaacaatactcctacgactaaacag |
237 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36848596 |
tcctaaaagtgaactattttatttcagtgtgcaaaagatcagattatgagacatattgttcttactatgatgtaccaacaacactcctacgactaaacag |
36848497 |
T |
|
| Q |
238 |
ttgactaataatacgtttggaaccacattgcgttcatattaaaatattaaaccaagcaccccactctgtagcttaaggatttttgtggtggacacaacat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
36848496 |
ttgactaataatacgtttggaaccacattgcgttcatattaaaatattaaaccaagcaccccactctgtagcttaaggatttttgtggttgaaacaacat |
36848397 |
T |
|
| Q |
338 |
cgggacatgataaatgacaattgaacgcgaaatcaaacatagcataagtccataaatcatgagaagagtttttgtttgtatttttatcaagattaaatg |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36848396 |
cgggacatgataaatgacaattgaacgcgaaatcaaacatagcataagtccataaatcatgagaagagtttttgtttgtatttttatcaagattaaatg |
36848298 |
T |
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