View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17131_high_6 (Length: 571)

Name: NF17131_high_6
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17131_high_6
NF17131_high_6
[»] chr4 (14 HSPs)
chr4 (9-552)||(41074806-41075354)
chr4 (92-185)||(14320962-14321055)
chr4 (92-185)||(14322132-14322225)
chr4 (99-185)||(14321708-14321794)
chr4 (99-185)||(14320540-14320626)
chr4 (187-237)||(46020667-46020717)
chr4 (187-230)||(46015435-46015478)
chr4 (195-237)||(46021346-46021388)
chr4 (194-232)||(46304201-46304239)
chr4 (187-232)||(46246221-46246266)
chr4 (196-237)||(46303770-46303811)
chr4 (187-231)||(46015982-46016026)
chr4 (130-190)||(46027955-46028014)
chr4 (130-190)||(46428272-46428332)
[»] scaffold0079 (5 HSPs)
scaffold0079 (255-421)||(6451-6625)
scaffold0079 (12-132)||(7027-7147)
scaffold0079 (190-237)||(6706-6753)
scaffold0079 (104-156)||(7857-7909)
scaffold0079 (148-190)||(6767-6809)
[»] scaffold0384 (5 HSPs)
scaffold0384 (255-421)||(3889-4064)
scaffold0384 (92-190)||(5609-5708)
scaffold0384 (12-132)||(4509-4629)
scaffold0384 (190-237)||(4145-4192)
scaffold0384 (148-190)||(4206-4248)
[»] chr1 (9 HSPs)
chr1 (25-237)||(50668398-50668626)
chr1 (62-190)||(50667974-50668102)
chr1 (185-234)||(3802615-3802664)
chr1 (127-185)||(3801754-3801812)
chr1 (116-190)||(50667366-50667440)
chr1 (194-235)||(3804059-3804100)
chr1 (192-237)||(50668119-50668164)
chr1 (185-237)||(3802173-3802225)
chr1 (193-237)||(50669344-50669388)
[»] chr5 (1 HSPs)
chr5 (30-125)||(8185984-8186079)
[»] chr8 (3 HSPs)
chr8 (202-233)||(4525277-4525308)
chr8 (187-233)||(4522904-4522950)
chr8 (146-184)||(39328272-39328310)
[»] chr7 (1 HSPs)
chr7 (30-125)||(715259-715350)


Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 9 - 552
Target Start/End: Original strand, 41074806 - 41075354
Alignment:
Q  9 tagcataggggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctt 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41074806 tagcatagaggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctt 41074905  T
Q  109 tgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattattttgtgaaaatgctagctctt 208  Q
    || |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  41074906 tgtggttgaattaatttgcatctcgtccatttgttatgatttagattttgacggtaaaaccatgggaagatgcaattattttgtgaaaatgctagctctt 41075005  T
Q  209 gattgagtgttaatatgcacataagttggnnnnnnnggctgttatatttgtcttctattatgtttttgccttgtccttttc------aactttcagccat 302  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||||      |||||||||||||    
T  41075006 gattgagtgttaatatgcacataagttgatttttttggctgttatatttgtcttctattatgtttttgccttgtctttttcttttttaactttcagccat 41075105  T
Q  303 attgaaatatcctctcacctttgggtttcttatttgaa-aaaacattaaataaacagaggtagcgacgaagccccattcaaaagatgaaatagaagaagt 401  Q
    ||||||||||||||  |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  41075106 attgaaatatcctc--acctttgggtttcttatttgatcaaaacattaaataaaaagaggtagcgacgaagccccattcaaaagacaaaatagaagaagt 41075203  T
Q  402 tgctgagccagcagtagagagctcagatgattccgatgatcctcttagtgatccgatatggtgggatggttcgtccttgggttgatatgagtacttatga 501  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41075204 tgctgagccagaagtagagagctcagatgattccgatgatcgtcttagtgatccgatatggtgggatggttcttcgttgggttgatatgagtacttatga 41075303  T
Q  502 ggaatggccgttgaatgaatgttatgatgaatggggcgaagatgaagactg 552  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41075304 ggaatggcggttgaatgaatgttatgatgaatggggcgaagatgaagactg 41075354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 14320962 - 14321055
Alignment:
Q  92 tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 185  Q
    ||||||||||| |||||| | |||||||||||||||| ||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||    
T  14320962 tgtattaatatgttctttacagttgaattaatttacacttcatccatttgttgtgatttagattttgacataagaaccatgtgaagatacaatt 14321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 14322132 - 14322225
Alignment:
Q  92 tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 185  Q
    ||||||||||| |||||| | ||||||||||||| || ||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||    
T  14322132 tgtattaatatgttctttacagttgaattaatttgcacttcatccatttgttgtgatttagattttgacataagaaccatgtgaagatacaatt 14322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 14321708 - 14321794
Alignment:
Q  99 atatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 185  Q
    |||| |||||||  ||||||||||| | || ||| ||||||||| ||||||||||| || || ||||||||||||||||||||||||    
T  14321708 atatgttctttggagttgaattaatctgcacttcatccatttgtcatgatttagatattaactgtagaaccatgggaagatacaatt 14321794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 14320540 - 14320626
Alignment:
Q  99 atatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 185  Q
    |||| |||||||  ||||||||||| | || ||| ||||||||| ||||||||||| || || ||||||||||| ||||||||||||    
T  14320540 atatgttctttggagttgaattaatctgcacttcatccatttgtcatgatttagatattaactgtagaaccatgtgaagatacaatt 14320626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 46020667 - 46020717
Alignment:
Q  187 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  46020667 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacataatttgg 46020717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 46015435 - 46015478
Alignment:
Q  187 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacat 230  Q
    |||| ||||||||| | |||||||||||||||||||||||||||    
T  46015435 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacat 46015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 46021346 - 46021388
Alignment:
Q  195 aaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  46021346 aaatgcaacctcttgattgaatgttaatatgcacataagttgg 46021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 46304239 - 46304201
Alignment:
Q  194 aaaatgctagctcttgattgagtgttaatatgcacataa 232  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  46304239 aaaatgcaagctcttgtttgagtgttaatatgcacataa 46304201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 46246266 - 46246221
Alignment:
Q  187 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataa 232  Q
    |||| ||||||||| | ||||||||||| |||||||||||||||||    
T  46246266 ttttatgaaaatgcaacctcttgattgaatgttaatatgcacataa 46246221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 46303811 - 46303770
Alignment:
Q  196 aatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  46303811 aatgcaagctcttgattttgtgttaatatgcacataagttgg 46303770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 46015982 - 46016026
Alignment:
Q  187 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacata 231  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||    
T  46015982 ttttatgaaaatgcaagttcttgattgagtgttaatatacacata 46016026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 46027955 - 46028014
Alignment:
Q  130 ttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 190  Q
    ||||||||| |||||||||||| ||||||||  || ||| ||| |||||||||||||||||    
T  46027955 ttcgtccatctgttatgatttaaattttgacttta-aactatgtgaagatacaattatttt 46028014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 46428272 - 46428332
Alignment:
Q  130 ttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 190  Q
    ||||||||  |||||||||||| ||||||||  || ||| ||| |||||||||||||||||    
T  46428272 ttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttt 46428332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 255 - 421
Target Start/End: Complemental strand, 6625 - 6451
Alignment:
Q  255 tttgtcttctattatgtttttgccttgtccttttc-----aactttcagccatattgaaatatcctc--tcacctttgggtttcttatttgaa-aaaaca 346  Q
    |||||||| | |||||||||||||||||| |||||     |||||||||||||||| ||||||||||  ||||| |||||||||||||||||  ||||||    
T  6625 tttgtctttttttatgtttttgccttgtctttttctttttaactttcagccatatttaaatatcctccctcacccttgggtttcttatttgatcaaaaca 6526  T
Q  347 ttaaataaacagaggtagcgacgaagccccattcaaaagatgaaatagaagaagttgctgagccagcagtagaga 421  Q
     |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||| ||||||||    
T  6525 ataaataaacagaggtagctacgaagccccattcaaaagacgaaatagaagaagttgctaagtcagaagtagaga 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 7147 - 7027
Alignment:
Q  12 cataggggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgc 111  Q
    ||||| ||||||  ||| |||||||| ||||||| |||||   ||||| ||||||| ||| |||||||||||||||    ||||||||||| ||||||||    
T  7147 catagaggaaaagcctcgtgtgacaatcaacccgattcttcccgagatacaagaagcagagagtaagttttactcagtcttgtattaatatgttctttgc 7048  T
Q  112 ggttgaattaatttacatttc 132  Q
    |||||||||||||| ||||||    
T  7047 ggttgaattaatttgcatttc 7027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 6753 - 6706
Alignment:
Q  190 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 6706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 7909 - 7857
Alignment:
Q  104 ttctttgcggttgaattaatttacatttcgtccatttgttatgatttagattt 156  Q
    |||||||||||||||||||||| |||||| ||||| | |||||||||||||||    
T  7909 ttctttgcggttgaattaatttgcatttcatccatctattatgatttagattt 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 6809 - 6767
Alignment:
Q  148 tttagattttgacggtagaaccatgggaagatacaattatttt 190  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  6809 tttaaattttgacggtagaaccatgggaaaatacaattctttt 6767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 255 - 421
Target Start/End: Complemental strand, 4064 - 3889
Alignment:
Q  255 tttgtcttctattatgtttttgccttgtccttttc------aactttcagccatattgaaatatcctc--tcacctttgggtttcttatttgaa-aaaac 345  Q
    |||||||| | |||||||||||||||||| |||||      |||||||||||||||| ||||||||||  ||||| |||||||||||||||||  |||||    
T  4064 tttgtctttttttatgtttttgccttgtctttttcttttttaactttcagccatatttaaatatcctccctcacccttgggtttcttatttgatcaaaac 3965  T
Q  346 attaaataaacagaggtagcgacgaagccccattcaaaagatgaaatagaagaagttgctgagccagcagtagaga 421  Q
    | |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| || ||| ||||||||    
T  3964 aataaataaacagaggtagctacgaagccccgttcaaaagacgaaatagaagaagttgctaagtcagaagtagaga 3889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 5708 - 5609
Alignment:
Q  92 tgtattaatatatt-ctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 190  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||| | |||||||||||||||| || |||||||||||||||||||||||| ||||    
T  5708 tgtattaatatatttctttgcggttgaattaatttgcatttcatccatctattatgatttagatttttaccgtagaaccatgggaagatacaattctttt 5609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 4629 - 4509
Alignment:
Q  12 cataggggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgc 111  Q
    ||||| ||||||  ||| |||||||| ||||||| |||||   ||||| ||||||| |||||||||||||||||||    ||||||||||| ||||||||    
T  4629 catagaggaaaagcctcgtgtgacaatcaacccgattcttctcgagatacaagaagcagaaagtaagttttactcagtcttgtattaatatgttctttgc 4530  T
Q  112 ggttgaattaatttacatttc 132  Q
    |||||||||||||| ||||||    
T  4529 ggttgaattaatttgcatttc 4509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 4192 - 4145
Alignment:
Q  190 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  4192 tgtgaaaatgctagctctagattgagtgttaatatgcacataagttgg 4145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 4248 - 4206
Alignment:
Q  148 tttagattttgacggtagaaccatgggaagatacaattatttt 190  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  4248 tttaaattttgacggtagaaccatgggaaaatacaattctttt 4206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 50668398 - 50668626
Alignment:
Q  25 tctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacac--tgtattaatatattctttgcggttgaattaa 122  Q
    |||| |||||| ||||| |||||| ||| |||||  ||||||||||||||||||||||||||   |   ||||||||||| |||||||| ||||||||||    
T  50668398 tctcttgtgacgaccaaaccgtttgttgctgagaaacaagaagtagaaagtaagttttactcttgatgttgtattaatatgttctttgcagttgaattaa 50668497  T
Q  123 tttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattat--------------tttgtgaaaatgctagctctt 208  Q
    | | || ||| ||||||||| |||||||||||||||||  ||||| |||| ||| ||| |||| |              ||| ||||||||| |||||||    
T  50668498 tctgcacttcatccatttgtcatgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgctttatgaaaatgcaagctctt 50668597  T
Q  209 gattgagtgttaatatgcacataagttgg 237  Q
    ||| |||||||||||||||||||||||||    
T  50668598 gatcgagtgttaatatgcacataagttgg 50668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 50667974 - 50668102
Alignment:
Q  62 aagaagtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacg 161  Q
    |||||||||||||||||||| |||| |   |||| | |||| |||||||| ||||||||| ||| || ||||||||| ||| |||||||| ||||||||     
T  50667974 aagaagtagaaagtaagtttcactcgatgttgtaatcatatgttctttgcagttgaattagtttgcacttcgtccatatgtcatgatttaaattttgact 50668073  T
Q  162 gtagaaccatgggaagatacaattatttt 190  Q
     |||||||||| |||||||||||| ||||    
T  50668074 ttagaaccatgtgaagatacaattttttt 50668102  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 3802664 - 3802615
Alignment:
Q  185 tattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagt 234  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  3802664 tattttatgaaaatgcaacctcttgattgagtgttaatatgcacataagt 3802615  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 3801812 - 3801754
Alignment:
Q  127 catttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 185  Q
    |||||| ||||| |||||||||||||||||||||  || ||||||| ||||| ||||||    
T  3801812 catttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacacaatt 3801754  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 50667366 - 50667440
Alignment:
Q  116 gaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 190  Q
    |||||||||| || ||| ||| ||||| |||||||||||||||||  ||||||||||  ||||| ||||| ||||    
T  50667366 gaattaattttcacttcatccttttgtcatgatttagattttgactttagaaccatgtcaagatgcaattctttt 50667440  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 3804100 - 3804059
Alignment:
Q  194 aaaatgctagctcttgattgagtgttaatatgcacataagtt 235  Q
    ||||||| ||||||||||||||||||||||||  ||||||||    
T  3804100 aaaatgcaagctcttgattgagtgttaatatgtgcataagtt 3804059  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 50668119 - 50668164
Alignment:
Q  192 tgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    ||||||||| ||||||| ||||| ||||||||||||| ||||||||    
T  50668119 tgaaaatgcaagctcttaattgaatgttaatatgcacgtaagttgg 50668164  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 3802225 - 3802173
Alignment:
Q  185 tattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    |||||| ||||||| | | |||||| ||||||||||||||||||||| |||||    
T  3802225 tattttatgaaaatacaacctcttgtttgagtgttaatatgcacataggttgg 3802173  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 50669344 - 50669388
Alignment:
Q  193 gaaaatgctagctcttgattgagtgttaatatgcacataagttgg 237  Q
    |||||||||||||  ||||| |||||||||| |||||||||||||    
T  50669344 gaaaatgctagctactgattcagtgttaatacgcacataagttgg 50669388  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 8185984 - 8186079
Alignment:
Q  30 tgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaattt 125  Q
    |||||| ||||||| |||| |||  |||| |||||| ||||||||||||||||||||||   ||||||||||| |||||||| |||||||||||||    
T  8185984 tgtgacgaccaacctgttttttgccgagaagcaagatgtagaaagtaagttttactcaatgttgtattaatatgttctttgcagttgaattaattt 8186079  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 233
Target Start/End: Complemental strand, 4525308 - 4525277
Alignment:
Q  202 agctcttgattgagtgttaatatgcacataag 233  Q
    ||||||||||||||||||||||||||||||||    
T  4525308 agctcttgattgagtgttaatatgcacataag 4525277  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 4522950 - 4522904
Alignment:
Q  187 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataag 233  Q
    |||| ||||||| | |||||||||||||||||||| |||||||||||    
T  4522950 ttttatgaaaattcaagctcttgattgagtgttaaaatgcacataag 4522904  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 39328272 - 39328310
Alignment:
Q  146 gatttagattttgacggtagaaccatgggaagatacaat 184  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  39328272 gatttagattttgactgtagaaccatgtgaagatacaat 39328310  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 715259 - 715350
Alignment:
Q  30 tgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaattt 125  Q
    |||||||| | | |||||||||  | ||| ||||||||||||||||    |||||||||   ||||||||||| ||||||| ||||||||||||||    
T  715259 tgtgacaagcgaaccgtttctttcttagaagcaagaagtagaaagt----tttactcaatgttgtattaatatgttctttgtggttgaattaattt 715350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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