View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_high_7 (Length: 541)
Name: NF17131_high_7
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 53597695 - 53597183
Alignment:
| Q |
19 |
ggattaccagcttgaacaatatgcaaggtggtgggctagtcaaagaaaaccagattgcaaagtggaacattcttttcctgaagatggtttcaaattagga |
118 |
Q |
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| T |
53597695 |
ggattaccagcttgaacaatatgcaaggtggtgggctagtcaaagaaaaccagattgcaaagtggaacattcttttcctgaagatggtttcaaattagga |
53597596 |
T |
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| Q |
119 |
gagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagcttgggctgatgaagagaaatattacacatatgtgactaattcat |
218 |
Q |
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| T |
53597595 |
gagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagcttgggctgatgaagagaaatattacacatatgtgactaattcat |
53597496 |
T |
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| Q |
219 |
gtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgtgtgtgatgatggagatgtgtt |
318 |
Q |
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| T |
53597495 |
gtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgtgtgtgatgatggagatgtgtt |
53597396 |
T |
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| Q |
319 |
catgacttgtaactatgatcctgttggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgtatattggttatatatggtagtg |
418 |
Q |
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| T |
53597395 |
catgacttgtaactatgatcctgttggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgtatattggttatatatggtagtg |
53597296 |
T |
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| Q |
419 |
tgaattcagttctttagtccttttaaactagcaatatgagtatattgtatgttggtataaattgagcaaatgtgtatggttgagatttgtgaatagttat |
518 |
Q |
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| T |
53597295 |
tgaattcagttatttagtccttttaaactagcaatatgagtatattgtatgttggtataaattgagcgaatgtgtatggttgtgacttgtgaatagttat |
53597196 |
T |
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| Q |
519 |
taaattgcctttg |
531 |
Q |
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| T |
53597195 |
taaattgcatttg |
53597183 |
T |
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