View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_11 (Length: 440)
Name: NF17131_low_11
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_11 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 11448 - 11862
Alignment:
| Q |
10 |
agatgaaacttcatgtgaagattggaatgttgagttagatgaaacttcatctgaagctgataatgttgagttagatagtaacagaagcaagaacatgttt |
109 |
Q |
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| T |
11448 |
agatgaaacttcatgtgaagattggaatgttgagttagatgaaacttcatttgaagctgataatgttgagttagatagtaacagaagcaagaacatgttt |
11547 |
T |
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| Q |
110 |
gaaatgaaagaaaatggtaaaagagtagtaaatgtcagccccgaaacttcggttagagatgatagcgttgagcaagggaggaacagaatgaaggctttga |
209 |
Q |
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| T |
11548 |
gaaatgaaagaaaatggtaaaagagtagtaaatgtcagccccgaaacttcggttagagatgatagcgttgagcaagggaggaacagaatgaaggctttga |
11647 |
T |
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| Q |
210 |
aggttaaattattaggttttcgtatgagaaggttaagaaaacagcgcagagctaaaatttcataccatgttaaagaagaaattaggttttcagactaagt |
309 |
Q |
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| T |
11648 |
aggttaagttattaggttttcgtatgagaaggttaagaaaacagcgcagagctaaaatttcataccatgttaaagaagaaatttggttttcagattaagt |
11747 |
T |
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| Q |
310 |
tttcatatgatcactgcttttgaagtccacgttgcaaggtatgatctactattcacctaactcaatgtatcaagaagtaattggatgatcttttgtaccc |
409 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11748 |
tttcatatgatcactgcttttgaagtcaatgttgcaaggtatgatctactattcacctaactcaatgtatcaagaagtaattggatgatcttttgtaccc |
11847 |
T |
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| Q |
410 |
ttattggaaagattt |
424 |
Q |
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| T |
11848 |
ttattggaaagattt |
11862 |
T |
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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 21916346 - 21916403
Alignment:
| Q |
321 |
cactgcttttgaagtccacgttgcaaggtatgatctactattcacctaactcaatgta |
378 |
Q |
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| T |
21916346 |
cactgctttggaagtccatgttgcaaggtatgatctactatccacctaactcaatgta |
21916403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 21916439 - 21916471
Alignment:
| Q |
377 |
tatcaagaagtaattggatgatcttttgtaccc |
409 |
Q |
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| T |
21916439 |
tatcaagaattaattggatgatcttttgtaccc |
21916471 |
T |
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