View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_12 (Length: 420)
Name: NF17131_low_12
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_12 |
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| [»] scaffold0334 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11177271 - 11177497
Alignment:
| Q |
1 |
aacataactgcaattgaaatcgaaca-------ccaaacagtagcgcaaacaacgaaaatatatggattatatggcacacgtactcagcaataacaattg |
93 |
Q |
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| T |
11177271 |
aacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattg |
11177370 |
T |
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| Q |
94 |
ttatatgctcagccccgcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggta |
193 |
Q |
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| T |
11177371 |
ttatatactcagcccagcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggta |
11177470 |
T |
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| Q |
194 |
agtgctgcaaaataaaatcgggttgag |
220 |
Q |
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| T |
11177471 |
agtgctgcaaaataaaatcgggttgag |
11177497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 11177567 - 11177673
Alignment:
| Q |
290 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaatgaaaaaggaaactgaaaaccttgattacaa |
389 |
Q |
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| T |
11177567 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaatgaaaaaggaaactgaaaaccttgattacaa |
11177666 |
T |
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| Q |
390 |
taacgtg |
396 |
Q |
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| T |
11177667 |
taacgtg |
11177673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 16684 - 16469
Alignment:
| Q |
23 |
aacaccaaacagtagcgcaaacaacgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaa------ |
116 |
Q |
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| T |
16684 |
aacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcaacaataacaattgttatatgctcagtcccgcaacaatggaac |
16585 |
T |
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| Q |
117 |
------------caattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaa |
204 |
Q |
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| T |
16584 |
agccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgcaaa |
16485 |
T |
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| Q |
205 |
ataaaatcgggttgag |
220 |
Q |
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| T |
16484 |
ataaaatcgggttgag |
16469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 290 - 396
Target Start/End: Complemental strand, 16399 - 16293
Alignment:
| Q |
290 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaatgaaaaaggaaactgaaaaccttgattacaa |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16399 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaataaaaaaggaaactgaaaaccttgattacaa |
16300 |
T |
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| Q |
390 |
taacgtg |
396 |
Q |
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||||||| |
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| T |
16299 |
taacgtg |
16293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16713 - 16681
Alignment:
| Q |
1 |
aacataactgcaattgaaatcgaacaccaaaca |
33 |
Q |
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| T |
16713 |
aacataactgcaattggaatcgaacaccaaaca |
16681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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