View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17131_low_13 (Length: 412)

Name: NF17131_low_13
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17131_low_13
NF17131_low_13
[»] chr4 (9 HSPs)
chr4 (1-396)||(6948421-6948817)
chr4 (60-151)||(54851840-54851931)
chr4 (60-137)||(54853850-54853928)
chr4 (113-157)||(6949777-6949821)
chr4 (106-144)||(27435588-27435626)
chr4 (60-137)||(54855592-54855669)
chr4 (60-144)||(54852272-54852357)
chr4 (97-144)||(37812397-37812444)
chr4 (62-157)||(54854413-54854510)
[»] chr3 (3 HSPs)
chr3 (60-158)||(27080210-27080309)
chr3 (60-133)||(18194851-18194925)
chr3 (63-157)||(18194586-18194680)
[»] chr5 (6 HSPs)
chr5 (60-143)||(16364592-16364676)
chr5 (62-166)||(7957997-7958102)
chr5 (65-143)||(11991120-11991199)
chr5 (108-137)||(29382380-29382409)
chr5 (108-165)||(29385054-29385111)
chr5 (60-143)||(10731557-10731640)
[»] chr7 (4 HSPs)
chr7 (60-139)||(11668283-11668363)
chr7 (70-157)||(11668679-11668767)
chr7 (108-166)||(8648794-8648852)
chr7 (108-144)||(15090501-15090537)
[»] chr2 (6 HSPs)
chr2 (60-143)||(34323317-34323402)
chr2 (306-363)||(26833173-26833230)
chr2 (62-144)||(16642001-16642084)
chr2 (60-151)||(10423576-10423668)
chr2 (257-323)||(37049531-37049597)
chr2 (301-334)||(43689832-43689865)
[»] chr1 (2 HSPs)
chr1 (60-151)||(2017798-2017889)
chr1 (108-151)||(25079283-25079327)
[»] chr8 (1 HSPs)
chr8 (60-133)||(22439297-22439371)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6948421 - 6948817
Alignment:
Q  1 acagaataggcgtgagtactatttataatgttgtgcccaagcaactagggtctcctacttcatcaaaaatatatccttttgtgtattctgcttaacctcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6948421 acagaataggcgtgagtactatttataatgttgtgcccaagcaactagggtctcctacttcatcaaaaatatatccttttgtgtattttgcttaacctcc 6948520  T
Q  101 cccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcatttaatcnnnnnnnnagagcaaacaaacttaatcttttttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||        ||| ||||||||||||||||||||||    
T  6948521 cccaatattttctctcttaaaaacaaattaaaacaaactcactcactaaaatacacccatttaatcttttttttagaacaaacaaacttaatcttttttt 6948620  T
Q  201 aaggaaaacaaacttctaaatatctaaagtgttaaaaaca-nnnnnnnnnnnnnnnnaagagacaaaaatgaaattctgtatactaacaacaacgtgttg 299  Q
    ||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||| ||||||||||||||||||||     
T  6948621 aaggaaaacaaacttctaaatatctaaagtgttaaaaacattttttagtttttttttaagagacaaaaatgaaattctatatactaacaacaacgtgttc 6948720  T
Q  300 gcatcttcaacacaagatgtgcctacaaaatgcaaacagagttatacaaagagtccacacaaaacgaatgcacagttaacaaatgcacagacaatca 396  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  6948721 gcatcttcagcacaagatgtgcctacaaaatgcaaacagagttatacaaagagtccacacaaaacaaatgcacagttaacaaatgcaccgacaatca 6948817  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 54851931 - 54851840
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaa 151  Q
    ||||||||| ||||||||||||||| || ||||| |||||||  | || |||||||||| |||||||||||||||||||| |||||| |||||    
T  54851931 tcatcaaaattatatccttttgtgtcttttgctttaacctccaactat-ttttctctctaaaaaacaaattaaaacaaacacactcggtaaaa 54851840  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 54853928 - 54853850
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaa 137  Q
    ||||||||| |||||| |||||||| || ||||| ||||||| || || || |||||||||||||||||||||||||||    
T  54853928 tcatcaaaattatatcattttgtgtcttttgctttaacctccacctattttctctctcttaaaaacaaattaaaacaaa 54853850  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 6949777 - 6949821
Alignment:
Q  113 tctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 157  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  6949777 tctcttaaaaataaattaaaacaaactcattcgctaaaatacact 6949821  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 27435626 - 27435588
Alignment:
Q  106 tattttctctcttaaaaacaaattaaaacaaactcactc 144  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27435626 tattttctctcttaaaaacaaactaaaacaaactcactc 27435588  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 54855669 - 54855592
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgcttaa-cctcccccaatattttctctcttaaaaacaaattaaaacaaa 137  Q
    ||||||||| ||||||||||||||| || | ||| | |||||||| || ||||||||||||||| ||||||||||||||    
T  54855669 tcatcaaaattatatccttttgtgtttttttcttcagcctccccctat-ttttctctcttaaaatcaaattaaaacaaa 54855592  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 54852357 - 54852272
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactc 144  Q
    |||| |||| ||||||||||||||| |  ||||| ||||||| || || |||||||| | |||||||||||||||||||| |||||    
T  54852357 tcattaaaattatatccttttgtgtctcttgctttaacctccacctattttttctctataaaaaacaaattaaaacaaacacactc 54852272  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 37812397 - 37812444
Alignment:
Q  97 ctcccccaatattttctctcttaaaaacaaattaaaacaaactcactc 144  Q
    ||||||| || ||||||||||| |||||||||||||||||||| ||||    
T  37812397 ctccccctattttttctctctttaaaacaaattaaaacaaacttactc 37812444  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 54854510 - 54854413
Alignment:
Q  62 atcaaaaatatatccttttgtgtattctgctt-aacctcccc-caatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 157  Q
    ||||||| ||||||||||||| | || ||||| || ||||||  | | ||||||||||||| | ||||||||||||||||||| || ||||| |||||    
T  54854510 atcaaaattatatccttttgtatcttttgcttcaatctccccatatttttttctctcttaagatcaaattaaaacaaactcacacgataaaacacact 54854413  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 27080210 - 27080309
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactc 158  Q
    ||||||||| ||| ||||||||||| || ||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  27080210 tcatcaaaattatttccttttgtgtcttttgcttcaacctccccctattttttccctcttaaaaacaaattaaaacaaactcactcaataaaatacactc 27080309  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 18194925 - 18194851
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaa 133  Q
    ||||||||| |||||| |||||||| || | ||| ||| |||||| || ||||||||||||||||||||||||||    
T  18194925 tcatcaaaattatatcattttgtgtcttttacttcaacttccccctattttttctctcttaaaaacaaattaaaa 18194851  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 18194680 - 18194586
Alignment:
Q  63 tcaaaaatatatccttttgtgtattctgcttaacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 157  Q
    |||||| ||||||||||||| | || |  | || ||||| |||| |||||| |||||||||||||||||||| ||||| || | ||||| |||||    
T  18194680 tcaaaagtatatccttttgtattttttcttcaatctccctcaattttttctatcttaaaaacaaattaaaacgaactcgcttgataaaacacact 18194586  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 16364592 - 16364676
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcact 143  Q
    ||||||||| |||||| |||||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16364592 tcatcaaaattatatctttttgtgtcttttgcttcaacctccccctatattttctctcttaaaaataaattaaaacaaactcact 16364676  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 7957997 - 7958102
Alignment:
Q  62 atcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcat 160  Q
    ||||||| |||||| |||||||| || ||||  ||| |||| | || ||| || ||||||||||||||||||||||||||||||| || ||| |||| |     
T  7957997 atcaaaattatatctttttgtgtcttttgctccaacttccctctatttttgctttcttaaaaacaaattaaaacaaactcactcgatagaattcactaac 7958096  T
Q  161 ttaatc 166  Q
    ||||||    
T  7958097 ttaatc 7958102  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 11991120 - 11991199
Alignment:
Q  65 aaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcact 143  Q
    |||||||||||||||||||| || ||||| || ||| ||| || || ||| ||||||||| |||| ||||||||||||||    
T  11991120 aaaaatatatccttttgtgtcttttgcttcaatctcaccctattttctctttcttaaaaataaatcaaaacaaactcact 11991199  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 29382380 - 29382409
Alignment:
Q  108 ttttctctcttaaaaacaaattaaaacaaa 137  Q
    ||||||||||||||||||||||||||||||    
T  29382380 ttttctctcttaaaaacaaattaaaacaaa 29382409  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 29385054 - 29385111
Alignment:
Q  108 ttttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcatttaat 165  Q
    |||||||||||| ||||||||||||||||| |||  || ||||| ||||| |||||||    
T  29385054 ttttctctcttagaaacaaattaaaacaaattcaaccgataaaacacactaatttaat 29385111  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 10731640 - 10731557
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcact 143  Q
    ||||||||| |||||| |||||||| || ||||| ||| || | | || |||||||||||| |||||||| ||||||||||||||    
T  10731640 tcatcaaaattatatc-ttttgtgtcttttgcttcaacatctctctattttttctctcttagaaacaaatgaaaacaaactcact 10731557  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 11668283 - 11668363
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaact 139  Q
    ||||||||| |||||||||||||||  | ||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  11668283 tcatcaaaattatatccttttgtgtcatttgcttcaacctccccctattttttctctcttaaaaacaaattaaaacaaact 11668363  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 11668679 - 11668767
Alignment:
Q  70 tatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 157  Q
    |||||| |||| ||| || ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11668679 tatatcattttatgtcttttgcttcaacgtccccctattttttctctcttaaaaacaaattaaaacaaactcactcgataaaatacact 11668767  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 8648794 - 8648852
Alignment:
Q  108 ttttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcatttaatc 166  Q
    |||| ||||||| ||||||||||||| ||||||||||| ||||| ||||| | ||||||    
T  8648794 ttttttctcttacaaacaaattaaaataaactcactcgataaaacacactaacttaatc 8648852  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 15090537 - 15090501
Alignment:
Q  108 ttttctctcttaaaaacaaattaaaacaaactcactc 144  Q
    |||||||| || |||||||||||||||||||||||||    
T  15090537 ttttctctattgaaaacaaattaaaacaaactcactc 15090501  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 34323402 - 34323317
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctctta-aaaacaaattaaaacaaactcact 143  Q
    ||||||||| ||||  ||||||||| || ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  34323402 tcatcaaaattatacacttttgtgtcttttgcttcaacctccccctatattttctctcttaaaaaacaaattaaaacaaactcact 34323317  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 26833173 - 26833230
Alignment:
Q  306 tcaacacaagatgtgcctacaaaatgcaaacagagttatacaaagagtccacacaaaa 363  Q
    ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||    
T  26833173 tcaacacaagatgtgccaacaaaatgcaaccaaagttatacaaaaagtccacacaaaa 26833230  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 16642084 - 16642001
Alignment:
Q  62 atcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactc 144  Q
    ||||||| |||||||||||| || || || || |||||| | | || |||||||||||||||||||||||||||||||||||||    
T  16642084 atcaaaattatatccttttgcgtcttttgtttcaacctctctctattttttctctcttaaaaacaaattaaaacaaactcactc 16642001  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 10423668 - 10423576
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaa 151  Q
    ||||||||| |||||| |||||||| || ||||  ||| |||| | || ||| || ||||||||||||||||||||||||||||||| |||||    
T  10423668 tcatcaaaattatatctttttgtgtcttttgctccaacttccctctatttttgctttcttaaaaacaaattaaaacaaactcactcgataaaa 10423576  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 37049597 - 37049531
Alignment:
Q  257 aagagacaaaaatgaaattctgtatactaacaacaacgtgttggcatcttcaacacaagatgtgcct 323  Q
    ||||| ||||||||||||| | |||||||||||||||| | | |||| |||| |||||| |||||||    
T  37049597 aagaggcaaaaatgaaattatatatactaacaacaacgggatcgcattttcagcacaaggtgtgcct 37049531  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 43689865 - 43689832
Alignment:
Q  301 catcttcaacacaagatgtgcctacaaaatgcaa 334  Q
    |||||||||||||||||||||||||| |||||||    
T  43689865 catcttcaacacaagatgtgcctacagaatgcaa 43689832  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 2017889 - 2017798
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaa 151  Q
    ||||||||| |||||  ||||||||||| || || ||||||| || || |||||||||||||||||||||||||||||||||||||| |||||    
T  2017889 tcatcaaaagtatatatttttgtgtattttgtttcaacctcctcctat-ttttctctcttaaaaacaaattaaaacaaactcactcgataaaa 2017798  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 25079327 - 25079283
Alignment:
Q  108 ttttctctcttaaaaa-caaattaaaacaaactcactcgctaaaa 151  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||    
T  25079327 ttttctctcttaaaaaacaaattaaaacaaactctctcgataaaa 25079283  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 22439297 - 22439371
Alignment:
Q  60 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaa 133  Q
    ||||||||| |||||| |||||||| || | ||| ||| |||||| || ||||||||||||||||||||||||||    
T  22439297 tcatcaaaattatatcattttgtgtcttttacttcaacttccccctattttttctctcttaaaaacaaattaaaa 22439371  T

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