View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_14 (Length: 378)
Name: NF17131_low_14
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 51285699 - 51285560
Alignment:
| Q |
244 |
ggaattttcctgcaacacattttctcaaccatgttatgttatgtgttgatcttattta---------------ccttaattataccctaaaatcttgtaa |
328 |
Q |
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| T |
51285699 |
ggaattttcctgcaacacattttctcaaccatgttatgttatgtgttgatcttatttattattaatcgcagaaccttaattataccctaaaatcttgtaa |
51285600 |
T |
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| Q |
329 |
tttcaagtatattataaacttgtggaagattggatctgtg |
368 |
Q |
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| T |
51285599 |
tttcaagtatattataaacttgtggaagattggatttgtg |
51285560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 51285847 - 51285776
Alignment:
| Q |
108 |
gctctcaatggaagaagttaacggtatttcactatcactctttattcactttttctttaacctgattccaat |
179 |
Q |
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| T |
51285847 |
gctctcaatggaagaagttaacggtatttcactatcactctttattcactttttctttaacctgattccaat |
51285776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 51285927 - 51285885
Alignment:
| Q |
1 |
tccctcttttatttattcatttcattccatcgttcttctttct |
43 |
Q |
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| T |
51285927 |
tccctcttttatttattcatttcattccatcgttcttctttct |
51285885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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