View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_18 (Length: 363)
Name: NF17131_low_18
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 6246536 - 6246211
Alignment:
| Q |
19 |
cttcagctgaacgagtcgacgatttatttgattcatggttaactgagaaagcaaaaccaccttggctatcatcatcttcatcaacaacgttgctgttttt |
118 |
Q |
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| T |
6246536 |
cttcagctgaacgagtcgacgatttatttgattcatggttaactgagaaagcaaaaccaccttggctatcatcatcttcatcaacaacgttgctgttttt |
6246437 |
T |
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| Q |
119 |
gttgtttgatgatgtttgatcaattatggacaaataatccatttcactatataattcagaaagcctagatggacttgaaggggcacttaagtaaaattca |
218 |
Q |
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| T |
6246436 |
gttgtttgatgatgtttgatcaattatggacaaataatccatttcactatataattcagaaagcctagatggacttgaaggggcacttaagtaaaattca |
6246337 |
T |
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| Q |
219 |
ccaaaacgttttggtgaagatggaggacttagatatggtgaactcattgttccactactaaaattgaatgtatccatattagaactttgtatcatcactt |
318 |
Q |
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| T |
6246336 |
ccaaaacgttttggtgaagatggaggacttagatatggtgaactcattgttccactattaaaattgaatgtatccatattagaactttgtatcatcactt |
6246237 |
T |
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| Q |
319 |
ccataattcttgatatcaatctaggg |
344 |
Q |
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| T |
6246236 |
ccataattcttgatatcaatctaggg |
6246211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 46630740 - 46630802
Alignment:
| Q |
201 |
gcacttaagtaaaa---ttcaccaaaacgttttggtgaagatggaggacttagatatggtgaa |
260 |
Q |
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| T |
46630740 |
gcacttaagtaaaaatcttcaccaaatcgttttggtgaagaaggtgtacttagataaggtgaa |
46630802 |
T |
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