View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_2 (Length: 700)
Name: NF17131_low_2
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 14 - 586
Target Start/End: Original strand, 1608422 - 1608994
Alignment:
| Q |
14 |
agataaactgtcaatgcaaagaacaggagaagtttaacatttttgcaacaaaatatcaaattttgcacagatatattctttctgacttcatcaaactcca |
113 |
Q |
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| T |
1608422 |
agataaactgtcaatgcaaagaacaggagaagtttaacttttttgcaacaaaatatcaaattttgcacagatatattctttctgacttcatcaaactcca |
1608521 |
T |
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| Q |
114 |
atcttgagtagtaaagaaaatacatttgtgacaaacatacatgtctaaatcaactaaaccacataagccctttaccctagaatttaatttgaatcatcgc |
213 |
Q |
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| T |
1608522 |
attttgagtagtaaagaaaatacatttgtgacaaacatacatgcctaaatcaactaaaccacataagccctttaccctagaatttaatttgaatcatcac |
1608621 |
T |
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| Q |
214 |
aaactatcataagcaaaatgagctaaaatgttgaacctttatgcattggaagccggtaaccatagcattgtcacttacaccatcactgctatgactaacc |
313 |
Q |
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| T |
1608622 |
aaactatcataagcaaaatgagctaaaatgttgaacctttatgcattggaagccggtaaccatagcattgtcacttacaccatcactgctatgactaacc |
1608721 |
T |
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| Q |
314 |
atcactaagggaatataaaaggtaggagataatgattaagaggactaagaagtttatgagctttgagaaagttattgaagagtaaagattgttgtgatct |
413 |
Q |
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| T |
1608722 |
atcactaagggaatagaaaaggtaggagataatgattaagaggaataagaagtttattagctttgataaagttattgaagagtgaagattgttgtgatct |
1608821 |
T |
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| Q |
414 |
ggtctttgaaattgtttttcatgatttagtgagaaatgagtttttatgagattttgtaaagtttgaaatttgcagagtaattaaattgaaatttggtaaa |
513 |
Q |
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| T |
1608822 |
ggtctttgaaattgtttttcatgatttagtgagaaatgagtttttatgagattttgtaaagtttgaaatttgcagagtaattaaattgaaatttggtaaa |
1608921 |
T |
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| Q |
514 |
gtttgaaggttttactatttgtgagacacttttctttttcctcgctatggtcaatgaattataggaaaatgtg |
586 |
Q |
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| T |
1608922 |
gtttgaaggttttactatttgtgagacacttttctttttcctcgctatggtcaatgaattataggaaaatgtg |
1608994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 11091533 - 11091455
Alignment:
| Q |
318 |
ctaagggaatataaaaggtaggagataatgattaagaggactaagaagtttatgagctttgagaaagttattgaagagt |
396 |
Q |
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| T |
11091533 |
ctaagagaataaaaaaggtaagagattgtgattaagaggaagaagaaagtgatgagctttgagaaagtgatggaagagt |
11091455 |
T |
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