View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_20 (Length: 357)
Name: NF17131_low_20
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 29653347 - 29653545
Alignment:
| Q |
18 |
tatcttagtgaaaatttgatggaaaggtgtcgtgagcagatcaaaattttgcatctgccagtttgggctcacattgaagaacactattatgatgatgatg |
117 |
Q |
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| T |
29653347 |
tatcttagtgaaaatttgagggaaaggtgtcgtgagcagatcaaaattttgcatctgccagtttgggctcacattgaagaacactattatgatgatggtg |
29653446 |
T |
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| Q |
118 |
tttaccttaagatgtttttaaataatgaaatatataatgtctttgtttgattctgagtggtggaggtgtaaggttattatcttggagtgactttgaagct |
217 |
Q |
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| T |
29653447 |
tttatcttgagatgtttttaaataatgaa--atataatgtctttgtttgattccgagtggttgaggtgtaaggttattttcttggagagactttgaagct |
29653544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 29653611 - 29653674
Alignment:
| Q |
284 |
gcatgcttgagtaatcggatggactgttatgttttttctaattgcgttgatttttcttcctttg |
347 |
Q |
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| T |
29653611 |
gcatgcttgagtaattggatggactgttatgtcttttctaattgcgttgatttttcttcctttg |
29653674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 29681699 - 29681825
Alignment:
| Q |
26 |
tgaaaatttgatggaaaggtgtcgtgagcagatcaaaattttgcatctgccagtttgggc-tcacattgaagaacactattatgatgatgatgtttacct |
124 |
Q |
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| T |
29681699 |
tgaaaatttgaaggaaaggtgtcatgagaagatcaaaaatttgcggctgtcagttaggccctcgtattgaagaacactattatgatgatcatatttatct |
29681798 |
T |
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| Q |
125 |
taagatgtttttaaataatgaaatata |
151 |
Q |
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| T |
29681799 |
tgagatgtatttaaatgatgaaatata |
29681825 |
T |
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