View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_22 (Length: 331)
Name: NF17131_low_22
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 7274929 - 7274818
Alignment:
| Q |
203 |
ataatttcactcaataaaatttgactgtgttttgcaattgtatgcatatttagaaaacaagttaaagaacaattacttctgtcttgaacgatgcaactgc |
302 |
Q |
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| T |
7274929 |
ataatttcactcaataaaatttgactgtgttttacaattgtatgcgtatttagaaaataagttaaagaacaattacttctgtcttgaacgatgcaactgc |
7274830 |
T |
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| Q |
303 |
catcaggaatat |
314 |
Q |
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| T |
7274829 |
catcaggaatat |
7274818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 7275045 - 7274926
Alignment:
| Q |
1 |
cagtaacaccgttgaacgaacagcaccgtccctaaaggctgtcgaagaaattgggtacaa---gagaggtgtacgaagagaagtggaggaatggaaatct |
97 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
7275045 |
cagtaacaccgttgaacgaacagcaccatccctaaaggccttcgaagaaattgggtacaacaagagaggtgtacgaagagaattggaggaatggaaatct |
7274946 |
T |
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| Q |
98 |
ccatcacgttccaaccataa |
117 |
Q |
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| T |
7274945 |
ccatcacgttccaaccataa |
7274926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 3367700 - 3367607
Alignment:
| Q |
162 |
ttctttagcaatgtattattgtgtcgcgtacaaggtgtttaataatttcactcaataaaatttgactgtgttttgcaattgtatgcatatttag |
255 |
Q |
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| T |
3367700 |
ttctttagcaaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttag |
3367607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 54188612 - 54188519
Alignment:
| Q |
162 |
ttctttagcaatgtattattgtgtcgcgtacaaggtgtttaataatttcactcaataaaatttgactgtgttttgcaattgtatgcatatttag |
255 |
Q |
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| T |
54188612 |
ttctttagcaaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttag |
54188519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 8570566 - 8570659
Alignment:
| Q |
162 |
ttctttagcaatgtattattgtgtcgcgtacaaggtgtttaataatttcactcaataaaatttgactgtgttttgcaattgtatgcatatttag |
255 |
Q |
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| T |
8570566 |
ttctttagcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttatttag |
8570659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 28696526 - 28696619
Alignment:
| Q |
162 |
ttctttagcaatgtattattgtgtcgcgtacaaggtgtttaataatttcactcaataaaatttgactgtgttttgcaattgtatgcatatttag |
255 |
Q |
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| T |
28696526 |
ttctttagcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttatttag |
28696619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 27428023 - 27427915
Alignment:
| Q |
194 |
aggtgtttaataatttcactcaataaaatttgactgtgttttgcaattgtatgcatatttagaaaacaagttaaagaacaattacttctgtcttgaacga |
293 |
Q |
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| T |
27428023 |
aggtgtttcataatttgaatcaataaaatttgactctattttgcaatcattttcttgtttaggaaagaagtgaatgaactataacttctgtcttgaagga |
27427924 |
T |
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| Q |
294 |
tgcaactgc |
302 |
Q |
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| T |
27427923 |
tgccactgc |
27427915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 23545319 - 23545279
Alignment:
| Q |
60 |
agagaggtgtacgaagagaagtggaggaatggaaatctcca |
100 |
Q |
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| T |
23545319 |
agagaggtgtacgaagagaaactgaggaatggaaatctcca |
23545279 |
T |
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