View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17131_low_24 (Length: 286)

Name: NF17131_low_24
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17131_low_24
NF17131_low_24
[»] chr8 (21 HSPs)
chr8 (14-268)||(30342493-30342746)
chr8 (149-185)||(19260564-19260600)
chr8 (137-185)||(24838155-24838203)
chr8 (151-185)||(12748943-12748977)
chr8 (151-185)||(27587263-27587297)
chr8 (152-185)||(16704491-16704524)
chr8 (151-184)||(32051518-32051551)
chr8 (150-185)||(28851842-28851877)
chr8 (151-185)||(12800885-12800919)
chr8 (151-185)||(22775670-22775704)
chr8 (151-185)||(30176404-30176438)
chr8 (149-179)||(35843118-35843148)
chr8 (137-186)||(24023399-24023448)
chr8 (149-185)||(3650560-3650596)
chr8 (149-185)||(6235536-6235572)
chr8 (137-185)||(13124348-13124396)
chr8 (137-185)||(15001260-15001308)
chr8 (137-185)||(20665348-20665396)
chr8 (137-185)||(30550711-30550759)
chr8 (157-185)||(32286349-32286377)
chr8 (137-185)||(44215460-44215508)
[»] chr6 (13 HSPs)
chr6 (14-268)||(18987018-18987272)
chr6 (139-185)||(14296942-14296988)
chr6 (137-185)||(27907936-27907984)
chr6 (137-180)||(29740510-29740553)
chr6 (151-185)||(8569751-8569785)
chr6 (151-185)||(21778691-21778725)
chr6 (151-184)||(4257643-4257676)
chr6 (149-186)||(14610021-14610057)
chr6 (149-186)||(22792924-22792961)
chr6 (137-185)||(247687-247735)
chr6 (137-177)||(2655020-2655060)
chr6 (149-185)||(10018439-10018475)
chr6 (137-185)||(33976272-33976320)
[»] chr5 (17 HSPs)
chr5 (14-268)||(23918251-23918505)
chr5 (151-185)||(22522786-22522820)
chr5 (149-185)||(26655504-26655540)
chr5 (149-185)||(26927089-26927125)
chr5 (137-185)||(34191461-34191509)
chr5 (137-184)||(32559332-32559379)
chr5 (151-185)||(4009909-4009943)
chr5 (151-185)||(6489049-6489083)
chr5 (151-185)||(6624818-6624852)
chr5 (151-185)||(17090908-17090942)
chr5 (151-185)||(40715934-40715968)
chr5 (151-184)||(3445233-3445266)
chr5 (137-185)||(18331735-18331783)
chr5 (149-185)||(25861932-25861968)
chr5 (137-185)||(37462139-37462187)
chr5 (149-185)||(37884703-37884739)
chr5 (137-185)||(39980536-39980584)
[»] chr2 (20 HSPs)
chr2 (86-132)||(3882307-3882353)
chr2 (14-57)||(3882228-3882271)
chr2 (151-185)||(10735816-10735850)
chr2 (151-185)||(29544669-29544703)
chr2 (137-185)||(16390631-16390679)
chr2 (151-183)||(27848200-27848232)
chr2 (151-185)||(24592831-24592865)
chr2 (151-185)||(27411134-27411168)
chr2 (151-185)||(42791337-42791371)
chr2 (151-185)||(44810747-44810781)
chr2 (137-185)||(3708721-3708769)
chr2 (137-185)||(4180725-4180773)
chr2 (149-185)||(4927434-4927470)
chr2 (137-185)||(6765638-6765686)
chr2 (137-185)||(11868647-11868695)
chr2 (137-177)||(22709113-22709153)
chr2 (149-185)||(25625756-25625792)
chr2 (137-185)||(31397774-31397822)
chr2 (137-185)||(35360040-35360088)
chr2 (137-185)||(36474790-36474838)
[»] chr7 (15 HSPs)
chr7 (137-185)||(19416542-19416590)
chr7 (137-185)||(8084455-8084503)
chr7 (137-185)||(18773741-18773789)
chr7 (137-185)||(36121680-36121728)
chr7 (151-185)||(145560-145594)
chr7 (155-185)||(21174405-21174435)
chr7 (151-185)||(21322217-21322251)
chr7 (151-185)||(27462421-27462455)
chr7 (151-185)||(31038507-31038541)
chr7 (149-185)||(7994869-7994905)
chr7 (137-185)||(20763182-20763230)
chr7 (149-181)||(27833390-27833422)
chr7 (137-185)||(29488748-29488796)
chr7 (137-185)||(33232382-33232430)
chr7 (137-185)||(34284524-34284572)
[»] chr4 (13 HSPs)
chr4 (137-185)||(54857600-54857648)
chr4 (137-185)||(9946455-9946503)
chr4 (151-185)||(11198370-11198404)
chr4 (151-185)||(43499633-43499667)
chr4 (151-185)||(49041966-49042000)
chr4 (149-186)||(14202463-14202500)
chr4 (149-185)||(8107617-8107653)
chr4 (137-185)||(10261754-10261802)
chr4 (137-185)||(19588182-19588230)
chr4 (137-185)||(21562653-21562701)
chr4 (137-185)||(26926695-26926743)
chr4 (137-185)||(35287492-35287540)
chr4 (137-185)||(43330174-43330222)
[»] chr3 (13 HSPs)
chr3 (137-185)||(25340909-25340957)
chr3 (151-185)||(4601886-4601920)
chr3 (151-185)||(38130944-38130978)
chr3 (137-185)||(334832-334880)
chr3 (137-177)||(34442440-34442480)
chr3 (151-185)||(48849748-48849782)
chr3 (151-185)||(53365946-53365980)
chr3 (138-183)||(35210118-35210163)
chr3 (137-185)||(916467-916515)
chr3 (149-185)||(7464476-7464512)
chr3 (137-185)||(12699990-12700038)
chr3 (153-185)||(22251445-22251477)
chr3 (137-185)||(44075141-44075189)
[»] scaffold0027 (1 HSPs)
scaffold0027 (149-185)||(61555-61591)
[»] chr1 (12 HSPs)
chr1 (137-185)||(8736463-8736511)
chr1 (137-185)||(24529713-24529761)
chr1 (149-185)||(49431978-49432014)
chr1 (151-185)||(6423746-6423780)
chr1 (151-185)||(17139502-17139536)
chr1 (151-185)||(34521175-34521209)
chr1 (149-185)||(3528454-3528490)
chr1 (151-179)||(19795107-19795135)
chr1 (137-185)||(29739365-29739413)
chr1 (149-185)||(39392950-39392986)
chr1 (137-177)||(41763148-41763188)
chr1 (137-185)||(42888603-42888651)
[»] scaffold0131 (1 HSPs)
scaffold0131 (18-56)||(14109-14147)
[»] scaffold0735 (1 HSPs)
scaffold0735 (137-185)||(1556-1604)
[»] scaffold0111 (1 HSPs)
scaffold0111 (149-185)||(39424-39460)
[»] scaffold0021 (1 HSPs)
scaffold0021 (137-185)||(161169-161217)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 30342493 - 30342746
Alignment:
Q  14 agagtagaaatcaaaataaaggtaaaatattcatggatgtatgcaatctgtacagtgtgcttcaaactaatttgtgcttctaactaattggttggaattt 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30342493 agagtagaaatcaaaatataggtaaaatattcatggatgtatgcaatctgtacagtgtgcttctaactaatttgtgcttctaactaattggttggaattt 30342592  T
Q  114 catattgatttttagagatgctgtgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaatcaagatcttgaattcatgtatcatgaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||    
T  30342593 catattgatttttagagatgctgtgcataaaatgcgtaaggtccggggttcaaa-cctggccaccaccaaaatcaagatcttgaattcatgcatcatgaa 30342691  T
Q  214 agaaaactaaataatatgggttcagatccggtccaaggacactggcactagagca 268  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30342692 agaaaactaaataatatgggtttagatccggtccaaggacactggcactagagca 30342746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 19260600 - 19260564
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||||    
T  19260600 gtaaggtccggggttcaaaccccggccaccaccaaaa 19260564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 24838203 - 24838155
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||    
T  24838203 tgcataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaa 24838155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 12748943 - 12748977
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  12748943 aaggtccggggttcaaaccccggccaccaccaaaa 12748977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 27587263 - 27587297
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  27587263 aaggtccggggttcaaaccccggccaccaccaaaa 27587297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 16704491 - 16704524
Alignment:
Q  152 aggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||||||||||||||||||||||||||    
T  16704491 aggtccggggttcaaaccccggccaccaccaaaa 16704524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 32051551 - 32051518
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaa 184  Q
    ||||||||||||||||||||||||||||||||||    
T  32051551 aaggtccggggttcaaaccccggccaccaccaaa 32051518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 28851842 - 28851877
Alignment:
Q  150 taaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||| |||||||||||||||||||||||||||||    
T  28851842 taaggttcggggttcaaaccccggccaccaccaaaa 28851877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 12800919 - 12800885
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||| ||||||||||||    
T  12800919 aaggtccggggttcaaaccccgaccaccaccaaaa 12800885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 22775670 - 22775704
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||| ||||||||||||||    
T  22775670 aaggtccggggttcaaaccctggccaccaccaaaa 22775704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 30176438 - 30176404
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||||||||||||||| |||||||||||    
T  30176438 aaggtccggggttcaaaccccggacaccaccaaaa 30176404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 35843148 - 35843118
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccacca 179  Q
    |||||||||||||||||||||||||||||||    
T  35843148 gtaaggtccggggttcaaaccccggccacca 35843118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 24023448 - 24023399
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaat 186  Q
    ||||||||||  | |||||||||||||||||||||| |||| ||||||||    
T  24023448 tgcataaaatatgcaaggtccggggttcaaaccccgaccactaccaaaat 24023399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 3650560 - 3650596
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  3650560 gtaaggttcggggttcaaaccccggccaccacaaaaa 3650596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 6235572 - 6235536
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  6235572 gtaaggtccgggattcaaaccccggccaccacaaaaa 6235536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 13124396 - 13124348
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||| ||| ||||    
T  13124396 tgcataaaatatgcaaggtccggggttcaaaccccggccatcacaaaaa 13124348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 15001308 - 15001260
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||  ||||||||||||||||||||||||||    
T  15001308 tgcataaaatatgcaaggtccaaggttcaaaccccggccaccaccaaaa 15001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 20665396 - 20665348
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  20665396 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 20665348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 30550759 - 30550711
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  30550759 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 30550711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 32286377 - 32286349
Alignment:
Q  157 cggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||    
T  32286377 cggggttcaaaccccggccaccaccaaaa 32286349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 44215508 - 44215460
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  44215508 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 44215460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 18987272 - 18987018
Alignment:
Q  14 agagtagaaatcaaaataaaggtaaaatattcatggatgtatgcaatctgtacagtgtgcttcaaactaatttgtgcttctaactaattggttggaattt 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18987272 agagtagaaatcagaataaaggtaaaatattcatggatgtatgcaatctgtacagtgtgcttctaactaatttgtgcttctaactaattggttggaattt 18987173  T
Q  114 catattgatttttagagatgctgtgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaatcaagatcttgaattcatgtatcatgaa 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  18987172 catattgatttttagagattctgtgcataaaatgcgtaaggtccgtggttcaaaccccggccaccgccaaaatcaagatcttgaattcatgcatcatgaa 18987073  T
Q  214 agaaaactaaataatatgggttcagatccggtccaaggacactggcactagagca 268  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18987072 agaaaactaaataatatgggttcagatctggtccaaggacactggcactagagca 18987018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 14296988 - 14296942
Alignment:
Q  139 cataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||    
T  14296988 cataaaatatgtaaggtccggggttcaaaccccggccaccacaaaaa 14296942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 27907984 - 27907936
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||| ||||||||||||||||||||||||||||    
T  27907984 tgcataaaatatgcaaggtctggggttcaaaccccggccaccaccaaaa 27907936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 29740510 - 29740553
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccac 180  Q
    ||||||| || || ||||||||||||||||||||||||||||||    
T  29740510 tgcataatatacgcaaggtccggggttcaaaccccggccaccac 29740553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 8569751 - 8569785
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  8569751 aaggtccggggttcaaaccccggccaccacaaaaa 8569785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 21778725 - 21778691
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  21778725 aaggtccggggttcaaaccccggccaccacaaaaa 21778691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 4257643 - 4257676
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaa 184  Q
    |||||| |||||||||||||||||||||||||||    
T  4257643 aaggtctggggttcaaaccccggccaccaccaaa 4257676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 14610021 - 14610057
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaat 186  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14610021 gtaaggtccggg-ttcaaaccccggccaccaccaaaat 14610057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 22792961 - 22792924
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaat 186  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  22792961 gtaaggtccggggttcaaaccccgaccacgaccaaaat 22792924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 247687 - 247735
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  247687 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 247735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 2655060 - 2655020
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccac 177  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  2655060 tgcataaaatatgtaagatccggggttcaaaccccggccac 2655020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 10018439 - 10018475
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  10018439 gtaaggttcggggttcaaactccggccaccaccaaaa 10018475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 33976272 - 33976320
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||| ||| ||||    
T  33976272 tgcataaaatatgcaaggtccggggttcaaaccccggccatcacaaaaa 33976320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 23918251 - 23918505
Alignment:
Q  14 agagtagaaatcaaaataaaggtaaaatattcatggatgtatgcaatctgtacagtgtgcttcaaactaatttgtgcttctaactaattggttggaattt 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23918251 agagtagaaatcagaataaaggtaaaatattcatggatgtatgcaatctgtacagtgtgcttctaactaatttgtgcttctaactaattggttggaattt 23918350  T
Q  114 catattgatttttagagatgctgtgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaatcaagatcttgaattcatgtatcatgaa 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  23918351 catattgatttttagagatactgtgcataaaatgcgtaaggtccgtggttcaaaccccggccaccgccaaaatcaagatcttgaattcatgcatcatgaa 23918450  T
Q  214 agaaaactaaataatatgggttcagatccggtccaaggacactggcactagagca 268  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23918451 agaaaactaaataatatgggttcagatctggtccaaggacactggcactagagca 23918505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 22522820 - 22522786
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  22522820 aaggtccggggttcaaaccccggccaccaccaaaa 22522786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 26655504 - 26655540
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||| ||||||||||||||||||||    
T  26655504 gtaaggtccggggttcgaaccccggccaccaccaaaa 26655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 26927089 - 26927125
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||| ||||||||||||||||||||    
T  26927089 gtaaggtccggggttcgaaccccggccaccaccaaaa 26927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 34191461 - 34191509
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||||||||||||||||||||| |||||||    
T  34191461 tgcataaaatatgcaaggtccggggttcaaaccccggccactaccaaaa 34191509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 32559332 - 32559379
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaa 184  Q
    ||||||||||  |||||||| |||||||||| ||||||||||||||||    
T  32559332 tgcataaaatatgtaaggtctggggttcaaatcccggccaccaccaaa 32559379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 4009909 - 4009943
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||| ||||||||||||||||||||||||||||||    
T  4009909 aagggccggggttcaaaccccggccaccaccaaaa 4009943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 6489049 - 6489083
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||| ||||||||||||||||||||||||||||    
T  6489049 aaggtctggggttcaaaccccggccaccaccaaaa 6489083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 6624818 - 6624852
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||| ||||||||||||||||||||    
T  6624818 aaggtccggggttcgaaccccggccaccaccaaaa 6624852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 17090908 - 17090942
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  17090908 aaggtccggggttcaaaccccggccaccacaaaaa 17090942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 40715968 - 40715934
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  40715968 aaggtccggggttcaaaccccggccaccacaaaaa 40715934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 3445266 - 3445233
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaa 184  Q
    ||||||||||||||||| ||||||||||||||||    
T  3445266 aaggtccggggttcaaatcccggccaccaccaaa 3445233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 18331735 - 18331783
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||| ||||||||||||| ||||    
T  18331735 tgcataaaatatgcaaggtccggggttcaagccccggccaccacaaaaa 18331783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 25861968 - 25861932
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25861968 gtaaggtccggagttcaaaccccggccaccacaaaaa 25861932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 37462139 - 37462187
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  37462139 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 37462187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 37884703 - 37884739
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  37884703 gtaaggtccagggttcaaaccccgaccaccaccaaaa 37884739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 39980536 - 39980584
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||| ||||||||||||    
T  39980536 tgcataaaatatgcaaggtccggagttcaaaccccgaccaccaccaaaa 39980584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 3882307 - 3882353
Alignment:
Q  86 tgtgcttctaactaattggttggaatttcatattgatttttagagat 132  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  3882307 tgtgcttcaaactagttggttggaatttcatattgatttttagagat 3882353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 3882228 - 3882271
Alignment:
Q  14 agagtagaaatcaaaataaaggtaaaatattcatggatgtatgc 57  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  3882228 agagtagaaatcagaataaaggtaaaatattcatggacgtatgc 3882271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 10735850 - 10735816
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  10735850 aaggtccggggttcaaaccccggccaccaccaaaa 10735816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 29544669 - 29544703
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  29544669 aaggtccggggttcaaaccccggccaccaccaaaa 29544703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 16390631 - 16390679
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||| ||||||||||||||||||||    
T  16390631 tgcataaaatatgcaaggtccggggttcgaaccccggccaccaccaaaa 16390679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 27848200 - 27848232
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaa 183  Q
    |||||||||||||||||||||||||||||||||    
T  27848200 aaggtccggggttcaaaccccggccaccaccaa 27848232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 24592865 - 24592831
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||| ||||||||||||||||||||||||||||    
T  24592865 aaggtctggggttcaaaccccggccaccaccaaaa 24592831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 27411134 - 27411168
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||| ||||||||||||||||||||    
T  27411134 aaggtccggggttcgaaccccggccaccaccaaaa 27411168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 42791337 - 42791371
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||||||||||||||||||| |||||||    
T  42791337 aaggtccggggttcaaaccccggccactaccaaaa 42791371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 44810747 - 44810781
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||||||||||||| |||||||||||||    
T  44810747 aaggtccggggttcaaaccccagccaccaccaaaa 44810781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 3708721 - 3708769
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  3708721 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 3708769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 4180725 - 4180773
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||| |||| |||||||    
T  4180725 tgcataaaatatgcaaggtccggggttcaaaccccgaccactaccaaaa 4180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 4927470 - 4927434
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  4927470 gtaaggtccggggttcaaaccccggccatcacaaaaa 4927434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 6765638 - 6765686
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  |||||||||||||||| |||| || ||||||||||||    
T  6765638 tgcataaaatatgtaaggtccggggttcgaaccacgaccaccaccaaaa 6765686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 11868695 - 11868647
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  11868695 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 11868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 22709113 - 22709153
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccac 177  Q
    ||||||||||  | |||||||||||||||||||||||||||    
T  22709113 tgcataaaatatgcaaggtccggggttcaaaccccggccac 22709153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 25625756 - 25625792
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||| | ||||||||||||    
T  25625756 gtaaggtccggggttcaaacccggaccaccaccaaaa 25625792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 31397822 - 31397774
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  |||||||||| | ||| ||||||||||||||||||||    
T  31397822 tgcataaaatatgtaaggtccgagattcgaaccccggccaccaccaaaa 31397774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 35360088 - 35360040
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  35360088 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 35360040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 36474790 - 36474838
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||  ||||||||||||||||    
T  36474790 tgcataaaatatgcaaggtccggggttcaaattccggccaccaccaaaa 36474838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 19416542 - 19416590
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||    
T  19416542 tgcataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaa 19416590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 8084455 - 8084503
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||| ||||||||||||||||||||    
T  8084455 tgcataaaatatgcaaggtccggggttcgaaccccggccaccaccaaaa 8084503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 18773789 - 18773741
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  |||||||||||||||||||||||| ||||||| ||||    
T  18773789 tgcataaaatatgtaaggtccggggttcaaaccccgaccaccacaaaaa 18773741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 36121680 - 36121728
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||||||||||||||||||||| |||||||    
T  36121680 tgcataaaatatgcaaggtccggggttcaaaccccggccactaccaaaa 36121728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 145560 - 145594
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||| ||||||||||||    
T  145560 aaggtccggggttcaaaccccgaccaccaccaaaa 145594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 21174405 - 21174435
Alignment:
Q  155 tccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||    
T  21174405 tccggggttcaaaccccggccaccaccaaaa 21174435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 21322217 - 21322251
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||| |||||||||||||||||||||||||||    
T  21322217 aaggtccagggttcaaaccccggccaccaccaaaa 21322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 27462455 - 27462421
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  27462455 aaggtccggggttcaaaccccggccaccacaaaaa 27462421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 31038541 - 31038507
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||| ||||||||||||||||||||||||||||    
T  31038541 aaggtctggggttcaaaccccggccaccaccaaaa 31038507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 7994905 - 7994869
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  7994905 gtaaggtctggggttcaaaccccgaccaccaccaaaa 7994869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 20763182 - 20763230
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  20763182 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 20763230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 27833422 - 27833390
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccacc 181  Q
    |||||||||||||||||||||||| ||||||||    
T  27833422 gtaaggtccggggttcaaaccccgaccaccacc 27833390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 29488748 - 29488796
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  29488748 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 29488796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 33232430 - 33232382
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  33232430 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 33232382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 34284572 - 34284524
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  34284572 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 34284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 54857648 - 54857600
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||    
T  54857648 tgcataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaa 54857600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 9946455 - 9946503
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||| ||||||||||||    
T  9946455 tgcataaaatatgcaaggtccggggttcaaaccccgaccaccaccaaaa 9946503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 11198370 - 11198404
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  11198370 aaggtccggggttcaaaccccggccaccacaaaaa 11198404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 43499633 - 43499667
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  43499633 aaggtccggggttcaaaccccggccaccacaaaaa 43499667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 49042000 - 49041966
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  49042000 aaggtccggggttcaaaccccggccaccacaaaaa 49041966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 14202500 - 14202463
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaat 186  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  14202500 gtaaggtccggggttcaaaccccgaccactaccaaaat 14202463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 8107617 - 8107653
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  8107617 gtaaggtccggggttcaaacaccggccaccacaaaaa 8107653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 10261802 - 10261754
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  10261802 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 10261754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 19588182 - 19588230
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||| |||||||||||||||||||||| ||||    
T  19588182 tgcataaaatatgcaaggtccagggttcaaaccccggccaccacaaaaa 19588230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 21562653 - 21562701
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  21562653 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 21562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 26926743 - 26926695
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  26926743 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 26926695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 35287540 - 35287492
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||| ||||||||||||||| ||||    
T  35287540 tgcataaaatatgcaaggtccggggttccaaccccggccaccacaaaaa 35287492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 43330174 - 43330222
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  43330174 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 43330222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 25340957 - 25340909
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||    
T  25340957 tgcataaaatatgcaaggtccggggttcaaaccccggccaccaccaaaa 25340909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 4601886 - 4601920
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  4601886 aaggtccggggttcaaaccccggccaccaccaaaa 4601920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 38130978 - 38130944
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||||||    
T  38130978 aaggtccggggttcaaaccccggccaccaccaaaa 38130944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 334880 - 334832
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||||||| ||||    
T  334880 tgcataaaatatgcaaggtccggggttcaaaccccggccaccacaaaaa 334832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 34442480 - 34442440
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccac 177  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  34442480 tgcataaaatatgtaaggtccggggttcaaaccccggccac 34442440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 48849782 - 48849748
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  48849782 aaggtccggggttcaaaccccggccaccacaaaaa 48849748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 53365946 - 53365980
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||||||||| |||||||||||||||||    
T  53365946 aaggtccggggttcaaatcccggccaccaccaaaa 53365980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 35210163 - 35210118
Alignment:
Q  138 gcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaa 183  Q
    |||||||||  | ||||||||||||||||||| |||||||||||||    
T  35210163 gcataaaatatgcaaggtccggggttcaaacctcggccaccaccaa 35210118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 916467 - 916515
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  916467 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 916515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 7464512 - 7464476
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  7464512 gtaaggtccggggttcaaaccccgaccaccacaaaaa 7464476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 12700038 - 12699990
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  |||| ||||||||||||||| ||||||||||| ||||    
T  12700038 tgcataaaatatgtaaagtccggggttcaaactccggccaccacaaaaa 12699990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 22251477 - 22251445
Alignment:
Q  153 ggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||| ||||||||||||||||||||    
T  22251477 ggtccggggttcgaaccccggccaccaccaaaa 22251445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 44075189 - 44075141
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||| |||||||||||||||||||| ||||    
T  44075189 tgcataaaatatgcaaggtccggagttcaaaccccggccaccacaaaaa 44075141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 61591 - 61555
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||| |||||||||||||||||||||||||||    
T  61591 gtaaggtccagggttcaaaccccggccaccaccaaaa 61555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 8736463 - 8736511
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||||||||||||||||||| ||||    
T  8736463 tgcataaaatatgcaaggtccggggttcaaaccccggccaccacaaaaa 8736511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 24529713 - 24529761
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  |||||||||||||||| || |||||||||||||||||    
T  24529713 tgcataaaatatgtaaggtccggggttcgaatcccggccaccaccaaaa 24529761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 49432014 - 49431978
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||||| ||||    
T  49432014 gtaaggtccggggttcaaaccccggccaccacaaaaa 49431978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 6423780 - 6423746
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  6423780 aaggtccggggttcaaaccccggccaccacaaaaa 6423746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 17139536 - 17139502
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||||||||||||||||| ||||||||||||    
T  17139536 aaggtccggggttcaaaccccgaccaccaccaaaa 17139502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 34521209 - 34521175
Alignment:
Q  151 aaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||||||||||| |||||||||||||||    
T  34521209 aaggtccggggttcaaacctcggccaccaccaaaa 34521175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 3528490 - 3528454
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  3528490 gtaaggtccggtgttcaagccccggccaccaccaaaa 3528454  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 19795135 - 19795107
Alignment:
Q  151 aaggtccggggttcaaaccccggccacca 179  Q
    |||||||||||||||||||||||||||||    
T  19795135 aaggtccggggttcaaaccccggccacca 19795107  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 29739365 - 29739413
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||||||||||||||||| |||| ||||||||||    
T  29739365 tgcataaaatatgcaaggtccggggttcaaacctcggctaccaccaaaa 29739413  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 39392950 - 39392986
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  39392950 gtaaggttcggggttcaaaccccggccaccacaaaaa 39392986  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 41763188 - 41763148
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccac 177  Q
    ||||||||||  | |||||||||||||||||||||||||||    
T  41763188 tgcataaaatatgcaaggtccggggttcaaaccccggccac 41763148  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 42888603 - 42888651
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||| |||||| |||||||||||||    
T  42888603 tgcataaaatatgcaaggtccggggttcgaacccccgccaccaccaaaa 42888651  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 14109 - 14147
Alignment:
Q  18 tagaaatcaaaataaaggtaaaatattcatggatgtatg 56  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  14109 tagaaataaaaatagaggtaaaatattcatggatgtatg 14147  T

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Target: scaffold0735 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 1556 - 1604
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | |||||||||||||| |||||| |||||||||||||    
T  1556 tgcataaaatatgcaaggtccggggttcgaacccccgccaccaccaaaa 1604  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 39424 - 39460
Alignment:
Q  149 gtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  39424 gtaaggtctggggttcaaaccccgaccaccaccaaaa 39460  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 161169 - 161217
Alignment:
Q  137 tgcataaaatgcgtaaggtccggggttcaaaccccggccaccaccaaaa 185  Q
    ||||||||||  | ||||| |||||||||||||||| ||||||||||||    
T  161169 tgcataaaatatgcaaggttcggggttcaaaccccgaccaccaccaaaa 161217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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