View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17131_low_27 (Length: 253)

Name: NF17131_low_27
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17131_low_27
NF17131_low_27
[»] chr1 (8 HSPs)
chr1 (13-236)||(15000487-15000711)
chr1 (13-200)||(15023253-15023440)
chr1 (13-200)||(15009136-15009323)
chr1 (13-200)||(15030248-15030421)
chr1 (109-179)||(14501727-14501797)
chr1 (104-177)||(14534966-14535039)
chr1 (129-171)||(15015581-15015623)
chr1 (13-84)||(14501802-14501873)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 15000711 - 15000487
Alignment:
Q  13 aaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggcaatcactgaaatatatataattga 112  Q
    ||||||||||| ||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  15000711 aaaataagacacgacattggtaatagcttatttctttgaagcattttggaaatttcaacacaatgaaattattggcatttactgaaatatatataattga 15000612  T
Q  113 attagacactcatatcatgatgaatgcattataatgggagatgtaggtgatatttataatgcattgtaattgatattcccatttgt-aaagtgaggactc 211  Q
    | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||| |||    
T  15000611 actagacacttatattatgatgaatgcattataatgggagatgtaggtgatatttataatgctttgtaattgatgttcccatttgtcatagtgagggctc 15000512  T
Q  212 agacttattatggtggttttgtatt 236  Q
    |||||||||||||||||||||||||    
T  15000511 agacttattatggtggttttgtatt 15000487  T

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Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 15023440 - 15023253
Alignment:
Q  13 aaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggcaatcactgaaatatatataattga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15023440 aaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggcaatcactgagatatatataattga 15023341  T
Q  113 attagacactcatatcatgatgaatgcattataatgggagatgtaggtgatatttataatgcattgtaattgatattcccatttgtaa 200  Q
    | ||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  15023340 actagacacttgtatcatgatgaatgcattacaatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaa 15023253  T

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Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 15009323 - 15009136
Alignment:
Q  13 aaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggcaatcactgaaatatatataattga 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15009323 aaaataagacatggcattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggcaatcactgagatatatataattga 15009224  T
Q  113 attagacactcatatcatgatgaatgcattataatgggagatgtaggtgatatttataatgcattgtaattgatattcccatttgtaa 200  Q
    | ||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  15009223 actagacacttgtatcatgatgaatgcattacaatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaa 15009136  T

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Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 15030421 - 15030248
Alignment:
Q  13 aaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggcaatcactgaaatatatataattga 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  15030421 aaaataagacatggcattggtaagagcttcattctttgaagtattttggaaatttcaacagaatgaaattattggcaagcactgagatatatataattga 15030322  T
Q  113 attagacactcatatcatgatgaatgcattataatgggagatgtaggtgatatttataatgcattgtaattgatattcccatttgtaa 200  Q
    | ||||||||              || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  15030321 actagacact--------------tgtattatgatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaa 15030248  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 14501797 - 14501727
Alignment:
Q  109 ttgaattagacactcatatcatgatgaatgcattataatgggagatgtaggtgatatttataatgcattgt 179  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14501797 ttgaactagacacttatattatgatgaatgcattataatgggaaatgtaggtgatatttataatgcattgt 14501727  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 14534966 - 14535039
Alignment:
Q  104 tataattgaattagacactcatatcatgatgaatgcattataatgggagatgtaggtgatatttataatgcatt 177  Q
    |||||||| | ||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14534966 tataattgcactagacacttgtattatgatgaatgcattataatgggaaatgtaggtgatatttataatgcatt 14535039  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 15015623 - 15015581
Alignment:
Q  129 atgatgaatgcattataatgggagatgtaggtgatatttataa 171  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  15015623 atgatgaatgcattataatgggagatgcaggtgatatttataa 15015581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 14501873 - 14501802
Alignment:
Q  13 aaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattat 84  Q
    ||||||||||| ||||||||||||||||| ||  | ||||| |||||| |||||| |||||||||||| |||    
T  14501873 aaaataagacacgacattggtaagagctttatcttctgaagcattttgaaaatttgaacacaatgaaagtat 14501802  T

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