View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_28 (Length: 251)
Name: NF17131_low_28
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_28 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 15056103 - 15056344
Alignment:
| Q |
11 |
cacagattcatcacccgaatctacgagaactcttgaagctgcaataaagtatgttgaattcacataatctagcagtttcataaactttgtaaagtggttc |
110 |
Q |
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| T |
15056103 |
cacagattcatcacccgaagctacgagaactcttgaagctacaataaagtatgttgaattcacacaatctagcagtttcataaactttgtaaattggttc |
15056202 |
T |
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| Q |
111 |
aaagaaaaataaactttgtagattttaatttcattagcatcttaaccctgtagtaatca---nnnnnnnctttatgtgaatgtgtgacgtatacaggtat |
207 |
Q |
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| T |
15056203 |
aaagaaaaataaactttgtaaattttaatttcattagcatctaaaccctctagtaatcattttttttttctttatgtgaa--tgtgacgtatacaggtat |
15056300 |
T |
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| Q |
208 |
agattgcacagaaaattgttaatggaaaaagttatcctggcatt |
251 |
Q |
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| T |
15056301 |
agattgcacagaaaattgttaatggaaaaagttatccttgcatt |
15056344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 15059609 - 15059701
Alignment:
| Q |
11 |
cacagattcatcacccgaatctacgagaactcttgaagctgcaataaagtatgttgaattcacataatctagcagtttcataaactttgtaaa |
103 |
Q |
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| T |
15059609 |
cacagattcatcacgagaagctacgagaactcctaaagccacaattaagtatgttgaattcacatcatctggaagtttcataagctttataaa |
15059701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 15059688 - 15059728
Alignment:
| Q |
119 |
ataaactttgtagattttaatttcattagcatcttaaccct |
159 |
Q |
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| T |
15059688 |
ataagctttataaattttaatttcattagcatcttaaccct |
15059728 |
T |
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