View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_3 (Length: 680)
Name: NF17131_low_3
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 22 - 665
Target Start/End: Original strand, 36322914 - 36323558
Alignment:
| Q |
22 |
tattgggacaatattt-gtcgtgatacatagcaatttccttatattatatagagcatgtgacaaacgtttgacaccattatattggtggtggttgatgat |
120 |
Q |
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| T |
36322914 |
tattgggacaatattttgtcgtgatacatagcaatttccttatattatatagagcatgtgacaaatgtttgacaccattatattggtggtggttgatgat |
36323013 |
T |
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| Q |
121 |
ggtcgcccggcggcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggttgacctccccnnnnnnnggacccttgggagaagc |
220 |
Q |
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| T |
36323014 |
ggtcgcccggcagcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggttgacctccccaaaaaaaggacccttgggagaagc |
36323113 |
T |
|
| Q |
221 |
aacatggacaaacattgttaacaaaaaacaaaactcatgtgtgtatgtgtagctaaagattaatggcaaacctcggttaaaatatgcatatcattttcat |
320 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
36323114 |
aacatggacaaacattgttaacaaaaaacaaaattcatgtgtgtatgtgtagctaaagattaatggcaaacctcggtttaaacatgcatatcattttcat |
36323213 |
T |
|
| Q |
321 |
aatttgttatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatgattctgtaaatgcatatgaataaaaattttcctc |
420 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323214 |
aatttgtaatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatgattctgtaaatgcatatgaataaaaattttcctc |
36323313 |
T |
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| Q |
421 |
aaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatgaagtctatatattgtgaattatgttgcag |
520 |
Q |
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| T |
36323314 |
aaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatgaagtctatatattgtgaattatgttgcag |
36323413 |
T |
|
| Q |
521 |
ggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagtgtgtgaaaaaattagtggca |
620 |
Q |
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| T |
36323414 |
ggactggcgttactcacagtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagtgtgtgaaaaaattagtggca |
36323513 |
T |
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| Q |
621 |
accatgaagcttttctcttgattggtctctacttgttggcctttg |
665 |
Q |
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| T |
36323514 |
accatgaagcttttctcttgattggtctctacttgttggcctttg |
36323558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 501 - 665
Target Start/End: Original strand, 36330240 - 36330404
Alignment:
| Q |
501 |
tattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagt |
600 |
Q |
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| T |
36330240 |
tattgtgaactatgctgcagggactggcgttactcacagtacaagcacattaccctaatctgaaaccagccatatgcaacttacttgacaaaaatgcagt |
36330339 |
T |
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| Q |
601 |
gtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
665 |
Q |
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| T |
36330340 |
gtgtgaaaaaattaatggcaaccatgaagcttttctcttcattagtctatacttgttggcctttg |
36330404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 589 - 665
Target Start/End: Original strand, 37919830 - 37919906
Alignment:
| Q |
589 |
caaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
665 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||| |
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| T |
37919830 |
caaaaatgcagtgcgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtctatacgtgttggcctttg |
37919906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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