View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17131_low_33 (Length: 230)

Name: NF17131_low_33
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17131_low_33
NF17131_low_33
[»] chr5 (2 HSPs)
chr5 (20-200)||(9815281-9815461)
chr5 (20-219)||(26354599-26354798)
[»] chr3 (19 HSPs)
chr3 (20-219)||(20015873-20016072)
chr3 (31-200)||(20036294-20036463)
chr3 (24-200)||(19838644-19838820)
chr3 (52-199)||(17114992-17115139)
chr3 (20-200)||(19849237-19849423)
chr3 (47-200)||(19858343-19858496)
chr3 (31-199)||(19832127-19832295)
chr3 (20-200)||(19818801-19818987)
chr3 (20-187)||(26647248-26647415)
chr3 (20-200)||(19956331-19956511)
chr3 (20-168)||(19951368-19951516)
chr3 (20-200)||(19812524-19812710)
chr3 (48-219)||(20046395-20046566)
chr3 (47-213)||(19943988-19944154)
chr3 (42-155)||(19989791-19989904)
chr3 (47-201)||(24839667-24839821)
chr3 (47-155)||(19853765-19853873)
chr3 (48-155)||(26653424-26653531)
chr3 (34-148)||(30914904-30915018)
[»] chr4 (2 HSPs)
chr4 (38-204)||(6397426-6397592)
chr4 (49-167)||(6398537-6398655)
[»] chr7 (6 HSPs)
chr7 (49-219)||(12497482-12497651)
chr7 (49-219)||(12521347-12521516)
chr7 (108-219)||(12495667-12495778)
chr7 (129-219)||(12519468-12519558)
chr7 (129-219)||(12579763-12579853)
chr7 (103-219)||(12581650-12581766)
[»] chr8 (2 HSPs)
chr8 (47-119)||(22689448-22689520)
chr8 (47-133)||(11544344-11544430)
[»] chr1 (1 HSPs)
chr1 (34-101)||(1717472-1717539)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 9815281 - 9815461
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  9815281 atagatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttccaaaatttacagccagaacccatgttgat 9815380  T
Q  120 aaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
     || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| ||||||||    
T  9815381 caatcacggagaccctttattgtttaggtgacataaggttcaggccttgaaaattgacaatgttaagctggcattagactc 9815461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 26354798 - 26354599
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    |||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||    
T  26354798 atagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaaattacaaccgcaacccatgttgat 26354699  T
Q  120 aaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
     |||| ||||||||||||||||||||| |||||||  || || |||||| ||||||||||||||||| |||  |||||||   ||||||||||| |||||    
T  26354698 caaccgtggagaccctttattgtttagatggcatagggtacaagccttgaaaattgacaatgttaagctggaattagacttggctatcaatgattttctt 26354599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 20016072 - 20015873
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    |||| ||||| ||||| ||||| ||| |||||||| |||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  20016072 ataggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtgggagaggttcaaaattttacaaccacaacccatgttgat 20015973  T
Q  120 aaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
     || |||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| | |||| ||||||||| ||||  ||||| |||||    
T  20015972 caatcatgaagaccctttattgtttaggtggcataaggttcaggctttgaaaattgacaatgttatggtggcattagactcagctattgatgattttctt 20015873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 20036463 - 20036294
Alignment:
Q  31 ttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggag 130  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||| |    
T  20036463 ttagaagttactcttgaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttacaaccacaacccatgttgttgaaccatgggg 20036364  T
Q  131 accctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
    ||||||| ||||||||||||||||| ||| || |||||   ||||||||||||| | |||| ||||||||    
T  20036363 acccttttttgtttaggtggcataaggttaagcccttgatgattgacaatgttaggatggcattagactc 20036294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 19838644 - 19838820
Alignment:
Q  24 atatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaac 123  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| | |||    
T  19838644 atatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttacaaccacaaccaatgttgttgaac 19838743  T
Q  124 catggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
    || || |||||||| ||||||||||||||||||||| ||||||||  |||||||||| ||| | |||| ||||||||    
T  19838744 cagggggacccttttttgtttaggtggcataaagttaaggccttgataattgacaatattaggatggctttagactc 19838820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 17114992 - 17115139
Alignment:
Q  52 cccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttaggtggc 151  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  17114992 cccttttacttggttcaaatttggatgtgggagaggttcaaaaatttacaaccacaatccatgttgatcaaccatggagaccctttattgtttaggtggc 17115091  T
Q  152 ataaagttcaggccttggaaattgacaatgttaagttggcgttagact 199  Q
    |||  ||||||||| || ||||||||||||||||| | || |||||||    
T  17115092 atagggttcaggccgtgaaaattgacaatgttaagctagcattagact 17115139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19849237 - 19849423
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaattt------acagccacaacccat 113  Q
    |||||| |||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||      |||||||||| ||||    
T  19849237 atagatttcccttggagattactcttaaatcacccttttatttggttcaaatttgggtgtgggagaggttcaaaaatttgcaaccacagccacaaaccat 19849336  T
Q  114 gttgataaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
    |||||  |||||||| || |||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||| ||||||||    
T  19849337 gttgaccaaccatggggatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggcattagactc 19849423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 19858343 - 19858496
Alignment:
Q  47 aatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttag 146  Q
    ||||||||||||||||| ||||| ||||||| ||||| || |||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||    
T  19858343 aatcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaatttagagccacaacccatgttgatcaagcatggagaacctttattgtttag 19858442  T
Q  147 gtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
    ||||||||| ||| |||||||| || ||||||||||||||||||| ||||||||    
T  19858443 gtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactc 19858496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 31 - 199
Target Start/End: Original strand, 19832127 - 19832295
Alignment:
Q  31 ttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggag 130  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||| | || |    
T  19832127 ttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttacatccacaacccatgttgttgaacaaagggg 19832226  T
Q  131 accctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagact 199  Q
    | || || ||||||||||||||||| ||| ||||||||| |||||||||||||| | |||| |||||||    
T  19832227 aaccatttttgtttaggtggcataaggttaaggccttggtaattgacaatgttaggatggcattagact 19832295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19818801 - 19818987
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttaca------gccacaacccat 113  Q
    |||||| ||| |||||  |||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||| | ||      ||||||| ||||    
T  19818801 atagatttcctttagaacttactcttcaatcacccttttatttggttcaaatatgggtgtgggagaggttcaaaaatatgcaaccactgccacaaaccat 19818900  T
Q  114 gttgataaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| | |||| ||||||||    
T  19818901 gttgataaaccatggagacccttttttgtttaggtggcatgatgttcaggccttggaaattgacaatgttaggatggcattagactc 19818987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 26647248 - 26647415
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    |||||||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||  |||||    
T  26647248 atagatatcctttggaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaaggttcaaaaatttacaaccacaacccaatttgat 26647347  T
Q  120 aaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagt 187  Q
     ||||| ||||||||||| ||||||||||||||||| ||| ||  |||| ||||||||| ||||||||    
T  26647348 caaccaaggagaccctttgttgtttaggtggcataaggttaagatcttgaaaattgacagtgttaagt 26647415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19956331 - 19956511
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    |||||||||| | |||  |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |    
T  19956331 atagatatccttcagaacttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaaggttcaaaaatttacagccacaacccatgttgtt 19956430  T
Q  120 aaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
     |||||| |  ||||||| ||||||||||||||||| ||| || |||||  | |||||||||||| | |||| ||||||||    
T  19956431 gaaccataggaacccttttttgtttaggtggcataaggttaagcccttgatagttgacaatgttaggatggcattagactc 19956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 19951368 - 19951516
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    |||||||||| |||||  |||||||| ||||||||||||||||||||||||||||| | |||||||| || ||||||||||| ||||||||||||  |||    
T  19951368 atagatatcctttagaacttactcttcaatcacccttttacttggttcaaatttggatttgggagaggtttaaaaatttacaaccacaacccatgccgat 19951467  T
Q  120 aaaccatggagaccctttattgtttaggtggcataaagttcaggccttg 168  Q
    |||||||||||||||||| ||||||||||||||||| ||| || |||||    
T  19951468 aaaccatggagacccttttttgtttaggtggcataaggttaagcccttg 19951516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19812524 - 19812710
Alignment:
Q  20 atagatatcccttagaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaac------ccat 113  Q
    |||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||      | ||    
T  19812524 atagatttcccttggagattactcttcaatcacccttttacttggttcaaatttgggtttgggagaggttcaaaaatttgcaaccacaacaacaaactat 19812623  T
Q  114 gttgataaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactc 200  Q
    |||||| |||||||| |||||||| ||||||||||||||||| |||  || |||   |||||||||||||| ||| |||||||||||    
T  19812624 gttgatcaaccatggcgacccttttttgtttaggtggcataaggttacggacttatcaattgacaatgttaggttagcgttagactc 19812710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 20046395 - 20046566
Alignment:
Q  48 atcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttagg 147  Q
    |||||||||||| ||||||||| |||||||||||||||| |||  ||| ||||  ||||||||||||||||| || |   | ||||||||||||||||||    
T  20046395 atcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattaccaccacaacccatgttgatcaatcccagcgaccctttattgtttagg 20046494  T
Q  148 tggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
    |||||||| ||||| || ||| ||||||| |||||||||||||| |||||||||||| || ||||| |||||    
T  20046495 tggcataaggttcacgcattgaaaattgataatgttaagttggcattagactcaactgtcgatgattttctt 20046566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 19943988 - 19944154
Alignment:
Q  47 aatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttag 146  Q
    |||||||||||||| |||||||| ||||||| ||||| || ||||||||||| ||||||||||| | |||||| ||  ||||||||| | ||||||| ||    
T  19943988 aatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaatttgcagccacaaccaaagttgatcaataatggagaccatgtattgttgag 19944087  T
Q  147 gtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgat 213  Q
    ||||||||| ||| |||||||| |||||||||||||   |||||| ||||| ||| |||||||||||    
T  19944088 gtggcataatgttaaggccttgaaaattgacaatgtggggttggcattagattcagctatcaatgat 19944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 19989791 - 19989904
Alignment:
Q  42 tcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattg 141  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||| |||| ||| ||| ||||||||| |||    
T  19989791 tcttcaatcacccttttacttggttcaagtttgggtttgggagaggttcaaaaatttacaaccacaacccatgctgatcaactatgaagacccttttttg 19989890  T
Q  142 tttaggtggcataa 155  Q
    ||||||||||||||    
T  19989891 tttaggtggcataa 19989904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 24839821 - 24839667
Alignment:
Q  47 aatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttag 146  Q
    |||||||||||||| |||||||| ||||||| ||||| || ||||||||||| ||||||||||||| ||||   ||  || |||||| | ||||||| ||    
T  24839821 aatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaatttgcagccacaacccaagttgggcaataatcgagaccatgtattgttgag 24839722  T
Q  147 gtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactca 201  Q
    ||||||||| ||| |||||||| ||||||||||||| | |||||| |||||||||    
T  24839721 gtggcataatgttaaggccttgaaaattgacaatgtgaggttggcattagactca 24839667  T

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Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 19853765 - 19853873
Alignment:
Q  47 aatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttag 146  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||| ||||||||||| | |||||| ||| ||||||||| | ||||||| ||    
T  19853765 aatcacccttttacttggtacaagcttgggtgtgggagagattcataaatttgcagccacaaccgaagttgatcaacaatggagaccatgtattgttgag 19853864  T
Q  147 gtggcataa 155  Q
    |||||||||    
T  19853865 gtggcataa 19853873  T

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Target: chr3; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 26653424 - 26653531
Alignment:
Q  48 atcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttagg 147  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||| |||||| ||   || ||||| || |||||| |||    
T  26653424 atcacccttttacttggttcaaatttgggtgtgggagaggttcacaaatttgcaaccacaacccaagttgatcaatagtgaagaccattcattgttgagg 26653523  T
Q  148 tggcataa 155  Q
    ||||||||    
T  26653524 tggcataa 26653531  T

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Target: chr3; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 30914904 - 30915018
Alignment:
Q  34 gaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagacc 133  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||| |||||||| || |||||||| || || ||  | ||||| || ||||| |||||||    
T  30914904 gaggttactcttcactcaccctttgacttggtacaaatttgggtttgggagaggttaaaaaatttgcaaccgcatactatgtttatcaaccagggagacc 30915003  T
Q  134 ctttattgtttaggt 148  Q
    ||| |||||||||||    
T  30915004 cttcattgtttaggt 30915018  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 6397592 - 6397426
Alignment:
Q  38 ttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagacccttt 137  Q
    ||||||||  |||||| ||||||||||||||| |||||| |||| |||| |||| | |||| |   ||||||| |||||||| | |||   |||||||||    
T  6397592 ttactcttctatcacctttttacttggttcaagtttgggcgtggaagaggttcacacatttgcgttcacaacctatgttgattacccacatagacccttt 6397493  T
Q  138 attgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaact 204  Q
    ||| ||||||||| |||| |||||||||||  ||||||||||| |||||||||| | ||||||||||    
T  6397492 attttttaggtggtataaggttcaggcctttaaaattgacaatattaagttggcatgagactcaact 6397426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 6398537 - 6398655
Alignment:
Q  49 tcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttaggt 148  Q
    ||||| |||||| |||||||| ||| |||||||||||| |||| ||| || || ||||||| ||||||||| ||| |  || || |||||||||||| |     
T  6398537 tcacctttttacgtggttcaagtttaggtgtgggagaggttcacaaacttgcaaccacaactcatgttgatcaacaacagacactctttattgtttaaga 6398636  T
Q  149 ggcataaagttcaggcctt 167  Q
     |||||| |||||| ||||    
T  6398637 agcataaggttcagacctt 6398655  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 12497482 - 12497651
Alignment:
Q  49 tcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttaggt 148  Q
    ||||| ||||||||||||||  ||||||| ||||||||  ||  ||| || || ||||||| ||||||||| |||||   ||| | ||||||||| ||||    
T  12497482 tcacctttttacttggttcatgtttgggt-tgggagaggctcgcaaacttgcaaccacaactcatgttgatcaaccacatagaacatttattgttgaggt 12497580  T
Q  149 ggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
    ||||||| |||| ||||||| |||||| |||||||||||  || |||| ||||||| |||||||| |||||    
T  12497581 ggcataaggttctggccttgaaaattggcaatgttaagtgtgcattaggctcaactgtcaatgattttctt 12497651  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 12521347 - 12521516
Alignment:
Q  49 tcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagaccctttattgtttaggt 148  Q
    ||||| ||||||||||||||  ||||||| ||||||||  ||  ||| || || ||||||| ||||||||| |||||   ||| | ||||||||| ||||    
T  12521347 tcacctttttacttggttcatgtttgggt-tgggagaggctcgcaaacttgcaaccacaactcatgttgatcaaccacatagaacatttattgttgaggt 12521445  T
Q  149 ggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
    ||||||| |||| ||||||| |||||| |||||||||||  || |||| ||||||| |||||||| |||||    
T  12521446 ggcataaggttctggccttgaaaattggcaatgttaagtgtgcattaggctcaactgtcaatgattttctt 12521516  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 12495778 - 12495667
Alignment:
Q  108 acccatgttgataaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatc 207  Q
    ||||||||| || |||||   ||||||||||||| |||||| | |||| |||||||||||| |||||||||||||| |||| || |||||||||| | ||    
T  12495778 acccatgttcatcaaccacatagaccctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaagtgtc 12495679  T
Q  208 aatgatattctt 219  Q
    |||||| |||||    
T  12495678 aatgattttctt 12495667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 12519558 - 12519468
Alignment:
Q  129 agaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
    |||| |||||||| |||||| | |||| |||||||||||| ||||||||||||||||||| || |||||||||| | |||||||| |||||    
T  12519558 agactctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactcaagtgtcaatgattttctt 12519468  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 12579853 - 12579763
Alignment:
Q  129 agaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaactatcaatgatattctt 219  Q
    ||||||||||||| |||||| | |||| |||||||||||| ||||||||||||||||||| || |||||||||| | | |||||| |||||    
T  12579853 agaccctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactcaagtgttaatgattttctt 12579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 12581650 - 12581766
Alignment:
Q  103 ccacaacccatgttgataaaccatggagaccctttattgtttaggtggcataaagttcaggccttggaaattgacaatgttaagttggcgttagactcaa 202  Q
    ||||||||||||||||| |||||   | | | | ||||||| ||||||||||| |||| ||||||| |||||  |||||||||||  || |||| |||||    
T  12581650 ccacaacccatgttgatcaaccacatataacatatattgttgaggtggcataaggttctggccttgaaaattagcaatgttaagtgtgcattaggctcaa 12581749  T
Q  203 ctatcaatgatattctt 219  Q
    ||  ||||||| |||||    
T  12581750 ctgccaatgattttctt 12581766  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 22689520 - 22689448
Alignment:
Q  47 aatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgat 119  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||  |||||||||||    
T  22689520 aatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaaatttgcaaccacggcccatgttgat 22689448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 11544344 - 11544430
Alignment:
Q  47 aatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttacagccacaacccatgttgataaaccatggagacc 133  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||||||||||| || ||| |||||| |||||| ||| |||||||||    
T  11544344 aatcacccatttacttggttcaagtttgggtttgggagaggttcaaaaatttgcaaccaaaacccaagttgatcaacaatggagacc 11544430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 1717472 - 1717539
Alignment:
Q  34 gaggttactcttgaatcacccttttacttggttcaaatttgggtgtgggagagattcaaaaatttaca 101  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||  || ||||||| ||||||    
T  1717472 gaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttaca 1717539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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