View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17131_low_4 (Length: 619)
Name: NF17131_low_4
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 6246187 - 6245600
Alignment:
| Q |
1 |
gtgtgaattggctaagagaatggttgttgagtttttgggttgtttagtttagcaaaatgattatgtgaaaagttatgtgtaatatgtttatatatgcaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6246187 |
gtgtgaattggctaagagaatggttgttgagtttttgggttctttagtttagcaaaatgattatgtgaaaagttatgtgtaatatgtttatatatgcaag |
6246088 |
T |
|
| Q |
101 |
tatagggaaggtgagaagaaggatcaaattggaaatttagatgtgaaaggttaaggggttgatttgttgaccattaaattggtcgttattatggggtaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6246087 |
tatagggaaggtgagaagaaggatcaaattggaaatttagatgtgaaaggttaaggggttgatttgttgaccattaaattggtcgttattatggggtaag |
6245988 |
T |
|
| Q |
201 |
ttattattgattaagccgccttataataccgttcaccattttttaatatgaaaatgaaaattctaacttcatgaagcatgtgtgtggatataaaacaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6245987 |
ttattattgattaagccgccttataataccgttcaccattttttaatatgaaaatgaaaattctaacttcatgaagcatgtgtgtggatataaaacaaat |
6245888 |
T |
|
| Q |
301 |
tattgttggtccacatgggtgaattttgtactatggtttggtaagcaagtgtgtaattttctttaatgaataagcaagtatgtaatatgtaacttgtagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6245887 |
tattgttggtccacatgggtgaattttgtactatggtttggtaagcaagtgtgtaattttctttaatgaataagcaagtatgtaatatgtaacttgtagt |
6245788 |
T |
|
| Q |
401 |
tgttgctaaactcgatttaatctatcaaccnnnnnnnnnnnnntctagattaaatctgctaagggtatacagcttgcaaggttgaagttgactggtgcat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6245787 |
tgttgctaaactcgatttaatctatcaacc--aaaaaaaaaaatctagattaaatctgctaagggtatacagcttgcaaggttgaagttgactggtgcat |
6245690 |
T |
|
| Q |
501 |
tttatttatgtgcacgttttatagtgggtaaagtttgtaaatgattatattttattatacaccaagacattcatgttctctttttaatat |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6245689 |
tttatttatgtgcacgttttatagtgggtatagtttgtaaatgattatattttattatacaccaagacattcatgttctctttttaatat |
6245600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University