View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17131_low_5 (Length: 582)
Name: NF17131_low_5
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_5 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 3 - 573
Target Start/End: Complemental strand, 4908 - 4338
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttgg |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4908 |
atcagaggaacacccatgcacaagtatggatccaattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctagtgcggttgg |
4809 |
T |
|
| Q |
103 |
cacgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4808 |
cacgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgctcgtatacttgtcgacattgacttctccaaaaggatctttcatgaa |
4709 |
T |
|
| Q |
203 |
gttattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgtta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4708 |
attattgtggaaagggaaggagcttcttatcctgtagaagttgtttataaacgaattccggatttttgctcgcattgtcagacacttggacatgatgtta |
4609 |
T |
|
| Q |
303 |
caaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4608 |
caaactgtcgttggttgtacccaaggaaggatgtcatgtctaaggataaagttgcaaaaaggaagacgcagataccagccacaaaacctcactgggtgtc |
4509 |
T |
|
| Q |
403 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcct |
502 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4508 |
tacaaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcct |
4409 |
T |
|
| Q |
503 |
actactgcgactccatcacaacaacagacatcacctgtaccagtgttggagttagtttcccctgatgatgt |
573 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4408 |
actactgcgactccaccacaacaacagacatcacctgtaccagtgttggagttagtttcccctgatgatgt |
4338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 3 - 573
Target Start/End: Original strand, 20380887 - 20381457
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttgg |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
20380887 |
atcagaggaacacccatgcgcaggtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaatttctagtgcggttgg |
20380986 |
T |
|
| Q |
103 |
cacgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20380987 |
cacgccgctagttcttgacaatgcaacactaaaaagactttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggatctttcgtgaa |
20381086 |
T |
|
| Q |
203 |
gttattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgtta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20381087 |
attattgtggaaagggaaggagcttcttatcctgtagaagttgtttataaacgaattccggatttttgctcgcattgtcagaaacttggacatgatgtta |
20381186 |
T |
|
| Q |
303 |
caaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtc |
402 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
20381187 |
caaactatcgttggttgtacccaaggaaggaagacatgtctaaggataaagttgcaaaagggaagacacaaataccagccacaaaacctcactgggtgtc |
20381286 |
T |
|
| Q |
403 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcct |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
20381287 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggttgctgctatgctt |
20381386 |
T |
|
| Q |
503 |
actactgcgactccatcacaacaacagacatcacctgtaccagtgttggagttagtttcccctgatgatgt |
573 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20381387 |
actactgcgactccaccacaacaacagacatcacttgtaccagtgttggagttagtttcccctgatgatgt |
20381457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 332 - 571
Target Start/End: Complemental strand, 11293724 - 11293485
Alignment:
| Q |
332 |
gatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtataggtt |
431 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11293724 |
gatgtcatgtctaaggataaagttgcaaaagggaagacgcagataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtataggtt |
11293625 |
T |
|
| Q |
432 |
catccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcctactactgcgactccatcacaacaacagac |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11293624 |
catccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgccggctgctgctatgcctactactgcgactccaccacaacaacagac |
11293525 |
T |
|
| Q |
532 |
atcacctgtaccagtgttggagttagtttcccctgatgat |
571 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
11293524 |
atcacatgtaccggtgttggagttagtttcccctgatgat |
11293485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 3 - 573
Target Start/End: Complemental strand, 38501376 - 38500806
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttgg |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38501376 |
atcagaggaacacccatgcgcaggtatggatccgattgatggcattgccacaagaatattggatggagcagactctacgtgaaattgctagtgcggttgg |
38501277 |
T |
|
| Q |
103 |
cacgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38501276 |
cacgccgctagttcttgacaatgcaacactgaaaagactttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggatctttcatgaa |
38501177 |
T |
|
| Q |
203 |
gttattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgtta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38501176 |
attattgtggaaagggaaggagcttcttatcctgtagaagttgtttacgaatgaattctggatttttgctcgcattgtcagacgcttggacatgatgtta |
38501077 |
T |
|
| Q |
303 |
caaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38501076 |
caaactgtcgttggttgtacccaaggaaggatgtcatgtctaaggataaagttgcaaaagggaagacgcaaataccagccacaaaacctcactgggtgtc |
38500977 |
T |
|
| Q |
403 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcct |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
38500976 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacttactatccctaatgagactcaaaaatccatgctggctgctgatatgcct |
38500877 |
T |
|
| Q |
503 |
actactgcgactccatcacaacaacagacatcacctgtaccagtgttggagttagtttcccctgatgatgt |
573 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38500876 |
actactacgactccaccacaacaacagacatcacttgtaccagtgttggagttagtttcccctgatgatgt |
38500806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 3 - 448
Target Start/End: Original strand, 9283199 - 9283644
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttgg |
102 |
Q |
| |
|
|||| |||||||| || || ||||||||||||||||||||||||||||||||| ||||||| ||| | | |||||| |||||||| | ||||||||| |
|
|
| T |
9283199 |
atcataggaacactcaagcacaagtatggatccgattgatggcactgccacaacaatattgaatgaaacgtactctatcggaaattgccagtgcggttgg |
9283298 |
T |
|
| Q |
103 |
cacgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaa |
202 |
Q |
| |
|
|||||| ||||||||||||||||| ||| | ||||| ||||||||||||||||| |||| | ||||||||||| || ||||||| || ||||||||| |
|
|
| T |
9283299 |
cacgccactagttcttgacaatgcgacattgaaaagactttttggacactatgcatgtatcttagtcgacattgatttttccaaaaagatttttcatgaa |
9283398 |
T |
|
| Q |
203 |
gttattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgtta |
302 |
Q |
| |
|
|||| || ||| ||||||| |||||||||| ||| ||||| |||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9283399 |
attatcgtagaacgggaaggtgcttcttatcctgtggaagtcgtttatgaacggattccagatttttgctcgcattgtcagacacttggacatgatgtta |
9283498 |
T |
|
| Q |
303 |
caaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtc |
402 |
Q |
| |
|
| | ||||||||||||||||||| |||||| | | | |||||||||||||||| |||||||||||||| |||||||||| |||||| | | |||| | |
|
|
| T |
9283499 |
ctagttgtcgttggttgtacccaaagaaggaagacatatctaaggataaagttgtgaaagggaagacgcagataccagccaagaaacctaagtaggtgcc |
9283598 |
T |
|
| Q |
403 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgca |
448 |
Q |
| |
|
| ||||| ||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
9283599 |
tgttaaagagaatccctctggtataagttcatccatcgcatttgca |
9283644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 3 - 534
Target Start/End: Original strand, 20950868 - 20951399
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttgg |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
20950868 |
atcagaggaacacccatgtgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctagtgtggttgg |
20950967 |
T |
|
| Q |
103 |
cacgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
20950968 |
cacgccgctagttcttgacaatgcaacactgaaaagactttttggacactatgcttgtatacttgtcgacattgaattctccaaaaggatctttcatgaa |
20951067 |
T |
|
| Q |
203 |
gttattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgtta |
302 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20951068 |
tttattgtggaaaaggaaggtgcttcttatcctgtagaagttgtttatgaacgaattctgaatttttgctcgcattgtcagacacttggacatgatgtta |
20951167 |
T |
|
| Q |
303 |
caaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtc |
402 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| | |
|
|
| T |
20951168 |
caaactgttgttggttgtacccaaggaaggatgtcatgtctaaggataaagttgcaaaagggaagacgcagataccggccacaaaacctcactaggtgcc |
20951267 |
T |
|
| Q |
403 |
tacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcct |
502 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
20951268 |
tacgaatgaaaatccctctggtataggttcatccaaagcatttgcagcacttattatccctaccgagactcaaaaatctatgtcggatgcttctatgcct |
20951367 |
T |
|
| Q |
503 |
actactgcgactccatcacaacaacagacatc |
534 |
Q |
| |
|
||||||| | ||||| |||||||||||||||| |
|
|
| T |
20951368 |
actactggggctccaacacaacaacagacatc |
20951399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 245 - 455
Target Start/End: Complemental strand, 10304217 - 10304007
Alignment:
| Q |
245 |
gtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgttacaaactgtcgttggttgtacccaaggaaggatgtcttgtcta |
344 |
Q |
| |
|
|||||| |||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||| |
|
|
| T |
10304217 |
gtttatgaacggattccagatttttgttcgcattgtcagacacttggacatgatgttacaaactgtcgttggttgtaccctaggaaggaagacatgtcta |
10304118 |
T |
|
| Q |
345 |
aggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtataggttcatccaaagcatt |
444 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| |||||||| |||||| || ||||| || || | ||||||||||||||||| ||||| |
|
|
| T |
10304117 |
aggataaagttgcaaaagggaagatgcagataccaaccaagaaacctcagtgggtgcatattaaagagaacccctatggtataggttcatccattgcatt |
10304018 |
T |
|
| Q |
445 |
tgcagcaccta |
455 |
Q |
| |
|
||||||||||| |
|
|
| T |
10304017 |
tgcagcaccta |
10304007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 245 - 455
Target Start/End: Complemental strand, 10288501 - 10288291
Alignment:
| Q |
245 |
gtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgttacaaactgtcgttggttgtacccaaggaaggatgtcttgtcta |
344 |
Q |
| |
|
|||||| |||| ||| | |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | | |||||| |
|
|
| T |
10288501 |
gtttatgaacggattccagatttttgttcgcattgtcagacacttagacatgatgttacaaactgtcgttggttgtaccctaggaaggaagacatgtcta |
10288402 |
T |
|
| Q |
345 |
aggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtataggttcatccaaagcatt |
444 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| |||||||| |||||| || ||||| || || | ||||||||||||||||| ||||| |
|
|
| T |
10288401 |
aggataaagttgcaaaagggaagatgcagataccatccatgaaacctcagtgggtgcatattaaagagaacccctatggtataggttcatccattgcatt |
10288302 |
T |
|
| Q |
445 |
tgcagcaccta |
455 |
Q |
| |
|
|||| |||||| |
|
|
| T |
10288301 |
tgcaacaccta |
10288291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 10288665 - 10288599
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatgga |
69 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10288665 |
atcagagaaatacacatgcgcaagtatggatccgattgatggcactgccacaagaatattggatgga |
10288599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 10304381 - 10304315
Alignment:
| Q |
3 |
atcagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatgga |
69 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10304381 |
atcagagaaatacacatgcgcaagtatggatccgattcatggcactgccacaagaatattggatgga |
10304315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Original strand, 29041681 - 29042207
Alignment:
| Q |
8 |
aggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttggcacgc |
107 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29041681 |
aggaacactcatgtgcaagtatggatccgattgatggcactgccacaagaatatcagatggagcagactctacgtgaaattgctagtgcggttggcacgc |
29041780 |
T |
|
| Q |
108 |
cgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaagttat |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
29041781 |
cgctagttcttgacaatgcaacactgaaaagactttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggatctttcattaagttat |
29041880 |
T |
|
| Q |
208 |
tgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgttacaaac |
307 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29041881 |
tgtggaaagtgaaggtgcttcttatcctgtagaagttgtttatgaacgaattctggatttttgctcgcattgtcagacacttggacatgatgttacaaac |
29041980 |
T |
|
| Q |
308 |
tgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtctacga |
407 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
29041981 |
tgttattggttgtacccaaggaaggatgtcatgtctaaggataaagttgcaaaagggaagacgcagataccagccacaaaacctcactgggtgcctacga |
29042080 |
T |
|
| Q |
408 |
aagaaaatccatctggtataggttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcctactac |
507 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
29042081 |
aagaaaatccctctagtataggtccatccaaagcatttgcaacaccgactatccctgccgagactcaaaaatctatgtcggatgctgctatgcctactgc |
29042180 |
T |
|
| Q |
508 |
tgcgactccatcacaacaacagacatc |
534 |
Q |
| |
|
|| ||||| |||||||||| ||||| |
|
|
| T |
29042181 |
tgttgctccaacacaacaacaaacatc |
29042207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 5 - 440
Target Start/End: Complemental strand, 46730 - 46293
Alignment:
| Q |
5 |
cagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttggca |
104 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| | || || ||||||| ||||||||||| |
|
|
| T |
46730 |
cagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagaagaccttgcgagatattgctagtgcggttggca |
46631 |
T |
|
| Q |
105 |
cgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacc--tttcatgaa |
202 |
Q |
| |
|
|||||| ||| ||||||||||| || | ||| | ||||||||||||||||||||||| | |||||||| ||||||||||||| | |||||| || |
|
|
| T |
46630 |
cgccgcaagtccttgacaatgcgactttgaaacgtctttttggacactatgcccgtattttagtcgacatagacttctccaaaaaaaaaaatttcatcaa |
46531 |
T |
|
| Q |
203 |
gttattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgtta |
302 |
Q |
| |
|
|||| ||||| ||||||| ||||| |||| ||| ||||| |||||| || ||||| | || |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46530 |
attatcgtggagcgggaaggtgcttcctatcttgtggaagtggtttatgaaagaattccagacttttgctcgcattgtcagacacttcgacatgatgtta |
46431 |
T |
|
| Q |
303 |
caaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtc |
402 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||| | |||||||||||| ||| || | |
|
|
| T |
46430 |
taaattgtcgttggttgtacccaaggaaggaagtcctgtctaaggataaagttgcaaaagggaagacatagataccggtcacaaaacctcattggatgcc |
46331 |
T |
|
| Q |
403 |
tacgaaagaaaatccatctggtataggttcatccaaag |
440 |
Q |
| |
|
|| |||||| ||||| |||||| ||| |||||||||| |
|
|
| T |
46330 |
tatgaaagagaatccctctggtgcaggctcatccaaag |
46293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 5 - 456
Target Start/End: Complemental strand, 21493290 - 21492842
Alignment:
| Q |
5 |
cagaggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttggca |
104 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| | || || ||||||| ||||||||||| |
|
|
| T |
21493290 |
cagagaaacacacatgcgtaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagagattgctagtgcggttggca |
21493191 |
T |
|
| Q |
105 |
cgccgctagttcttgacaatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaagt |
204 |
Q |
| |
|
|||||| ||| ||||||||||| || | ||| | ||||||||||| ||||||||||| | |||||||| ||||||||||||| || ||||||||| | |
|
|
| T |
21493190 |
cgccgcaagtccttgacaatgcgactttgaaacgtctttttggacattatgcccgtattttagtcgacatagacttctccaaaaagatttttcatgaaat |
21493091 |
T |
|
| Q |
205 |
tattgtggaaagggaaggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgttaca |
304 |
Q |
| |
|
||| |||| | |||||| ||||| |||| ||| ||||| |||||| || ||||| | || |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
21493090 |
tatagtgg-agcggaaggtgcttcctatcctgtggaagtggtttatgaaagaattccagacttttgctcgcattgtcagacccttggac---atgttacg |
21492995 |
T |
|
| Q |
305 |
aactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccac-aaaacctcactgggtgtct |
403 |
Q |
| |
|
|| ||||||||| |||||||||||||||| || ||| ||||||||||||||| |||||||||||| | ||||| | || ||||||||| |||||| || |
|
|
| T |
21492994 |
aattgtcgttggctgtacccaaggaaggaaatcatgtataaggataaagttgctaaagggaagacgtagataccggttacaaaaacctcattgggtgcct |
21492895 |
T |
|
| Q |
404 |
acgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacctac |
456 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||| || |||||||| ||||| |
|
|
| T |
21492894 |
acgaaagagaatccctctggtgtaggttcatccaacgcttttgcagcgcctac |
21492842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 21 - 358
Target Start/End: Complemental strand, 33066329 - 33065993
Alignment:
| Q |
21 |
cgcaagtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttggcacgccgctagttcttga |
120 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||||| ||| |||| |
|
|
| T |
33066329 |
cgcaagtacggattcgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcacgccgctcgttgttga |
33066230 |
T |
|
| Q |
121 |
caatgcaacacttaaaaggctttttggacactatgcccgtatacttgtcgacattgacttctccaaaaggacctttcatgaagttattgtggaaagggaa |
220 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||| |||||| | ||||||||||| || ||||||| || ||||| ||| || | || || ||||| |
|
|
| T |
33066229 |
caatgcaaccttgtaaagactttttggacactatgcacgtatattagtcgacattgattt-tccaaaaagatttttcacgaaattctcgtcaaacgggaa |
33066131 |
T |
|
| Q |
221 |
ggagcttcttatcatgtagaagttgtttataaacgaatttcggatttttgctcgcattgtcagacacttggacatgatgttacaaactgtcgttggttgt |
320 |
Q |
| |
|
| | |||||||| ||| |||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066130 |
tgtggttcttatcctgtggaagttgtttatgaacggattccggatttttgttcgcattgtcagacacttggacatgatgttacaaactgtcgttggttgt |
33066031 |
T |
|
| Q |
321 |
acccaaggaaggatgtcttgtctaaggataaagttgca |
358 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
33066030 |
acccaaggaaggaagacatgtctaaggataaagttgca |
33065993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 329 - 528
Target Start/End: Original strand, 8982672 - 8982871
Alignment:
| Q |
329 |
aaggatgtcttgtctaaggataaagttgcaaaagggaagacgcatataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtatag |
428 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
8982672 |
aaggatgtcatgtctaaggataaagttgcaaaagggaagacgcagataccagccacaaaacctcattgggtgcttatgaaagaaaatccatctggtatag |
8982771 |
T |
|
| Q |
429 |
gttcatccaaagcatttgcagcacctactatccctaatgagactcaaaaatctatgtcggctgctgctatgcctactactgcgactccatcacaacaaca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
8982772 |
gttcatccaaagcatttgcagcacctactatccctgttgagactcaaaaatctatgtcggctgctactatgcctactcctgcgactccaccaccacaaca |
8982871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 27176061 - 27176120
Alignment:
| Q |
46 |
actgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttggcac |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||| ||||| | |||||| ||||| |
|
|
| T |
27176061 |
actgccacaagagtattggatggagcagacgcttcgtgagattgcaagtgcggtgggcac |
27176120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 573
Target Start/End: Original strand, 8982923 - 8982952
Alignment:
| Q |
544 |
agtgttggagttagtttcccctgatgatgt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8982923 |
agtgttggagttagtttcccctgatgatgt |
8982952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 27186432 - 27186485
Alignment:
| Q |
46 |
actgccacaagaatattggatggagcagactctacgtgaaattgctattgcggt |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||| ||||| | |||||| |
|
|
| T |
27186432 |
actgccacaagagtattggatggagcagacgcttcgtgagattgcaagtgcggt |
27186485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 263 - 452
Target Start/End: Complemental strand, 13581552 - 13581363
Alignment:
| Q |
263 |
gatttttgctcgcattgtcagacacttggacatgatgttacaaactgtcgttggttgtacccaaggaaggatgtcttgtctaaggataaagttgcaaaag |
362 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||| ||| | |||||||||||||||||||||||||| | |||||||||||| |||| |||| | |
|
|
| T |
13581552 |
gatttttgctctcattgtcagacagtaggacatgatgctactcattgtcgttggttgtacccaaggaaggaaaacatgtctaaggatacagtttcaaagg |
13581453 |
T |
|
| Q |
363 |
ggaagacgcatataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcac |
452 |
Q |
| |
|
||||| |||| || |||| || ||| ||| |||||| |||| ||||| ||||| | ||||||||||||||||| |||||| |||||| |
|
|
| T |
13581452 |
ggaaggcgcaaattccagtcaagaaaattcagtgggtgcctacaaaagagaatcctcccggtataggttcatccaatgcattttcagcac |
13581363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 27504709 - 27504781
Alignment:
| Q |
42 |
tggcactgccacaagaatattggatggagcagactctacgtgaaattgctattgcggttggcacgccgctagt |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || || || ||||| || | ||||||||||||||||||||| |
|
|
| T |
27504709 |
tggcactgccgcaagaatattggatggaacatacacttcgggaaatcgcaagtgcggttggcacgccgctagt |
27504781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 15497281 - 15497342
Alignment:
| Q |
8 |
aggaacacccatgcgcaagtatggatccgattgatggcactgccacaagaatattggatgga |
69 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || ||||||| | |||||||||| ||||||||||| |
|
|
| T |
15497281 |
aggaacactcatgctcaagtgtggattcgtttgatggaattgccacaagagtattggatgga |
15497342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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