View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17131_low_9 (Length: 466)
Name: NF17131_low_9
Description: NF17131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17131_low_9 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: scaffold0450 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Complemental strand, 10557 - 10118
Alignment:
| Q |
20 |
atgatgaccaatgagacttgcctgattagggttttgattcgatcttattggtgactcattcaacacagaggatgagattccagcttgaggatcaatatta |
119 |
Q |
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| T |
10557 |
atgatgaccaatgagacttgcctgattagggttttgattcgaacttattggtgactcattcaacacagaggatgaaattccagcttgaggatcgatatta |
10458 |
T |
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| Q |
120 |
tctccatctttatgtaactggtgaagtgaacaaatttaggtcaaatacttttaataaaattccttttcgataataaaatcttttcgataatgacattacc |
219 |
Q |
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| T |
10457 |
tctccatctttatgtaactggtgaagtgaacaaatttaggtcaaatagttttaataaaattccttttcgataataacatcttttcgataatgacattacc |
10358 |
T |
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| Q |
220 |
ttctcaaggggttgcacatcttgatagaaattaaagaggtcggaattcagaagtccacttgcatcattgttctcattcatctgattcaagacaaaaaata |
319 |
Q |
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| T |
10357 |
ttctcaaggggttgcacatcttgatagaaattaaagaggtcagaattcagaagaagacttgcatcattgttctcattcatctgattcaagacaaaaaata |
10258 |
T |
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| Q |
320 |
tgtcagtaacattaaaaataatttttggtgcgcgcacattacgtgtgtgtctatataccaa--------atattgtttgcagacctcattgatggaatta |
411 |
Q |
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| T |
10257 |
tgtcagtaacattaaaaataatttatggtgcgcgcacattacatgtgtgtctatataccaaatgtttctatattgtttgcatacctcattgatggaatta |
10158 |
T |
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| Q |
412 |
gcattcttatggtgttcctcattttcaacagcagcctttg |
451 |
Q |
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| T |
10157 |
gcattcttatggtgttcctcattttcaacagcagcctttg |
10118 |
T |
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