View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17132_high_1 (Length: 203)

Name: NF17132_high_1
Description: NF17132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17132_high_1
NF17132_high_1
[»] chr6 (45 HSPs)
chr6 (13-189)||(30059985-30060161)
chr6 (20-177)||(29887304-29887461)
chr6 (20-177)||(28926382-28926539)
chr6 (36-177)||(29835238-29835379)
chr6 (36-177)||(29894576-29894717)
chr6 (20-167)||(24730862-24731009)
chr6 (36-177)||(29866672-29866813)
chr6 (20-174)||(29073770-29073924)
chr6 (20-174)||(29078534-29078688)
chr6 (20-174)||(29106343-29106497)
chr6 (20-177)||(30061830-30061987)
chr6 (20-167)||(24890091-24890238)
chr6 (20-177)||(24263587-24263744)
chr6 (20-177)||(29211228-29211385)
chr6 (20-165)||(24886413-24886557)
chr6 (20-177)||(29905646-29905803)
chr6 (20-177)||(30126890-30127047)
chr6 (20-167)||(29882442-29882589)
chr6 (20-167)||(29909598-29909745)
chr6 (20-177)||(30118576-30118733)
chr6 (20-167)||(29903253-29903400)
chr6 (20-167)||(29357824-29357971)
chr6 (20-173)||(29929280-29929433)
chr6 (20-167)||(29116268-29116415)
chr6 (20-177)||(29085025-29085182)
chr6 (20-177)||(29348433-29348590)
chr6 (20-177)||(29889737-29889894)
chr6 (20-155)||(29946444-29946579)
chr6 (20-104)||(29898084-29898168)
chr6 (20-135)||(29099350-29099465)
chr6 (20-116)||(29366317-29366413)
chr6 (20-120)||(29876832-29876932)
chr6 (20-112)||(30999838-30999930)
chr6 (49-177)||(29949732-29949860)
chr6 (44-110)||(16702057-16702123)
chr6 (20-106)||(24271853-24271939)
chr6 (20-134)||(30149534-30149648)
chr6 (20-165)||(25451125-25451270)
chr6 (49-164)||(29953542-29953657)
chr6 (119-177)||(24271799-24271857)
chr6 (28-129)||(30053442-30053543)
chr6 (92-167)||(29912051-29912126)
chr6 (92-167)||(29914071-29914146)
chr6 (49-111)||(15727090-15727152)
chr6 (49-137)||(30135161-30135250)
[»] scaffold0573 (1 HSPs)
scaffold0573 (20-177)||(4144-4301)
[»] scaffold0237 (1 HSPs)
scaffold0237 (26-167)||(22356-22497)
[»] chr3 (4 HSPs)
chr3 (11-131)||(24219116-24219236)
chr3 (20-104)||(24226827-24226911)
chr3 (40-110)||(33997967-33998037)
chr3 (49-177)||(16351086-16351214)
[»] chr2 (1 HSPs)
chr2 (20-151)||(15062737-15062868)
[»] chr1 (5 HSPs)
chr1 (21-122)||(10130145-10130246)
chr1 (20-111)||(17251320-17251411)
chr1 (21-137)||(19490258-19490374)
chr1 (28-111)||(41316274-41316358)
chr1 (40-100)||(41198768-41198828)
[»] scaffold0572 (1 HSPs)
scaffold0572 (21-111)||(3241-3331)
[»] scaffold0054 (1 HSPs)
scaffold0054 (20-76)||(53532-53588)
[»] chr7 (1 HSPs)
chr7 (49-177)||(3643073-3643201)
[»] scaffold0014 (3 HSPs)
scaffold0014 (28-176)||(137389-137537)
scaffold0014 (28-98)||(104652-104722)
scaffold0014 (68-110)||(121382-121424)
[»] scaffold0019 (1 HSPs)
scaffold0019 (49-111)||(126024-126086)
[»] scaffold0429 (1 HSPs)
scaffold0429 (28-111)||(6211-6294)
[»] scaffold0051 (2 HSPs)
scaffold0051 (49-111)||(47804-47866)
scaffold0051 (28-96)||(43201-43269)
[»] chr4 (1 HSPs)
chr4 (49-116)||(44262489-44262556)
[»] scaffold0654 (1 HSPs)
scaffold0654 (49-110)||(1122-1183)
[»] chr8 (1 HSPs)
chr8 (68-129)||(9782594-9782655)
[»] scaffold0086 (1 HSPs)
scaffold0086 (62-106)||(31220-31264)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 30060161 - 30059985
Alignment:
Q  13 gagaagaatgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattat 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  30060161 gagatgaatgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcaggttgacaaggcaattgcattat 30060062  T
Q  113 taacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatggagccttggctttg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060061 taacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatggagccttggctttg 30059985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 29887304 - 29887461
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  29887304 atgatagaggtcaaccacctgatataattacttacagttctttattagatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaa 29887403  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
     ||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  29887404 tttgaaagaccagggtattcgaccaaatatgtacacatacactattcttattgatgga 29887461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 28926539 - 28926382
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28926539 atgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaacaaa 28926440  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    |||||||||||||||| | | ||||||||| |||||| |||||||||| ||| |||||    
T  28926439 attgaaagaccagggtcttcaaccaaatatgtacacatacactattcttattaatgga 28926382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 29835238 - 29835379
Alignment:
Q  36 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 135  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  29835238 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagggt 29835337  T
Q  136 atccgaccaaatatttacacacacactattctaattgatgga 177  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29835338 attcgaccaaatatgtacacatacactattcttattgatgga 29835379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 29894576 - 29894717
Alignment:
Q  36 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 135  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  29894576 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagggt 29894675  T
Q  136 atccgaccaaatatttacacacacactattctaattgatgga 177  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29894676 attcgaccaaatatgtacacatacactattcttattgatgga 29894717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 24730862 - 24731009
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24730862 atgatagaggtcaaccacctaatataataacttacaattctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaacaaa 24730961  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
     ||||||||||||||||| |||||| |||| |||||| ||||| ||||    
T  24730962 tttgaaagaccagggtattcgaccagatatgtacacatacactgttct 24731009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 29866672 - 29866813
Alignment:
Q  36 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 135  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  29866672 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaatttgaaagaccagggt 29866771  T
Q  136 atccgaccaaatatttacacacacactattctaattgatgga 177  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29866772 attcgaccaaatatgtacacatacactattcttattgatgga 29866813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 29073770 - 29073924
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29073770 atgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaa 29073869  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgat 174  Q
    |||||||||||| ||||| ||||||| |||  ||||| |||||||||| ||||||    
T  29073870 attgaaagaccaaggtattcgaccaactatgcacacatacactattcttattgat 29073924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 29078534 - 29078688
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29078534 atgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaa 29078633  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgat 174  Q
    |||||||||||| ||||| ||||||| |||  ||||| |||||||||| ||||||    
T  29078634 attgaaagaccaaggtattcgaccaactatgcacacatacactattcttattgat 29078688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 29106343 - 29106497
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29106343 atgatagaggtgtaccacctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaa 29106442  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgat 174  Q
    |||||||||||| ||||| ||||||| |||  ||||| |||||||||| ||||||    
T  29106443 attgaaagaccaaggtattcgaccaactatgcacacatacactattcttattgat 29106497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 30061987 - 30061830
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||  ||||||||||||||  ||||||| |||||||||||||  |||||||| ||||    
T  30061987 atgatagaggtcaaccacctaatataattacttacaattctatattggatgctttatgcaaacgccatcatcttgacaaggcaatcacattattatcaaa 30061888  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||||||||| |||||||| | ||| |||||||||||| ||||||||||||||| ||||    
T  30061887 attgaaagatcagggtattcaaccgaatatttacacatacactattctaattggtgga 30061830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 24890238 - 24890091
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||| | |||| ||||| ||||||||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24890238 atgatagaggtcagccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaacaaa 24890139  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
     ||||||||||||||||| |||||| |||| |||||| |||| |||||    
T  24890138 tttgaaagaccagggtattcgaccagatatgtacacatacaccattct 24890091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 24263744 - 24263587
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||| |||| |||| |||||||||||| || |||| |||||||||  |||| ||||||||||||||||   |||||||||||||||||||||||| |||    
T  24263744 atgatcgagggcaacaacctgatataatcacgtacagttctatattggatgccttatgcaaaaaccatctggttgacaaggcaattgcattattaataaa 24263645  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  24263644 attgaaagaccagggtattcgaccaaatatgtacacatacactattcttattgatgga 24263587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 29211385 - 29211228
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||| ||||| ||||||||| |||||||||  ||||||||||||||| |||||   ||||||||||| ||||||||||||||||    
T  29211385 atgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaacccatcgggttgacaaggcagttgcattattaacaaa 29211286  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    |||||||||||| ||||| |||||||||||  ||||| |||||||||| |||||||||    
T  29211285 attgaaagaccaaggtattcgaccaaatatgcacacatacactattcttattgatgga 29211228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 24886557 - 24886413
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaa-ggcaattgcattattaacaa 118  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||||||||||||||||||    
T  24886557 atgatagaggtcagccacctgatataattacttacaattctatattggatgctttatg-aaaaaccatcatgt-gacaaaggcaattgcattattaacaa 24886460  T
Q  119 aattgaaagaccagggtatccgaccaaatatttacacacacactatt 165  Q
    ||||||||||||||||||| |||||| |||| |||||| ||||||||    
T  24886459 aattgaaagaccagggtattcgaccagatatgtacacatacactatt 24886413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 29905646 - 29905803
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||| | |||||||||||||||||| | |||||||||  ||||||||||||||||| ||||  |||||||||||||  |||||||||||||    
T  29905646 atgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacattattaacaaa 29905745  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||||||||||| |||||| | ||||||||| |||||| |||| ||||| |||||||||    
T  29905746 attgaaagacctgggtattcaaccaaatatgtacacatacaccattcttattgatgga 29905803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 30127047 - 30126890
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||  ||||||| ||||||||||| ||||| ||    
T  30127047 atgatagaggtcaaccacctgatataattatttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaagcaattgcattgttaacgaa 30126948  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||| ||| |||||||||| | ||||| | | |||||| |||||||||| |||||||||    
T  30126947 atttaaaaaccagggtattcaaccaagtgtgtacacatacactattcttattgatgga 30126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 29882442 - 29882589
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||  |||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  29882442 atgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcattattaacaaa 29882541  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
    |||||||| ||| ||||| |||||| ||||  ||||| ||||||||||    
T  29882542 attgaaaggccaaggtattcgaccagatatgaacacatacactattct 29882589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 29909598 - 29909745
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||  |||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  29909598 atgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcattattaacaaa 29909697  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
    |||||||| ||| ||||| |||||| ||||  ||||| ||||||||||    
T  29909698 attgaaaggccaaggtattcgaccagatatgaacacatacactattct 29909745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 30118733 - 30118576
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||| | |||||||||||||||||| | |||||||||  ||||||||||||||||| ||||  |||||||||||||  |||||||||||||    
T  30118733 atgatagaggtcagccacctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacattattaacaaa 30118634  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||||||||||| ||| || | ||||||||| |||||| |||| ||||| |||||||||    
T  30118633 attgaaagacctgggaattcaaccaaatatgtacacatacaccattcttattgatgga 30118576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 29903253 - 29903400
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||  || ||| |||||||| |||||||||||    
T  29903253 atgatcgagggcaacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgctggcaaagcaattgcgttattaacaaa 29903352  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
    |||||||||||||||||| |||||||||||  ||||| |||| |||||    
T  29903353 attgaaagaccagggtattcgaccaaatatgaacacatacaccattct 29903400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 29357971 - 29357824
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||| ||||| ||||||||| |||||||||  ||||||||||||||||||||||  ||||||| |||||||| ||||||||| |    
T  29357971 atgatagaggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaatgcaattgcgttattaacaca 29357872  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
      ||||| |||||||||| | ||||||||| |||||| ||||||||||    
T  29357871 gatgaaaaaccagggtattcaaccaaatatgtacacatacactattct 29357824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 29929280 - 29929433
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  |  |||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||||| ||    
T  29929280 atgatagaggtgtagcacctaatatagttacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaagcaattgcattgttaacgaa 29929379  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattga 173  Q
    ||| |||||||||||||| | ||||| | | |||||| |||||||||| |||||    
T  29929380 attcaaagaccagggtattcaaccaagtgtgtacacatacactattcttattga 29929433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 29116268 - 29116415
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || ||||  ||||  ||||||||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||||| ||    
T  29116268 atgatagaggtgtaccacctactatacgtacttacaattctatattagatgctttatgcaaaatccatcaagttgacaaagcaattgcattgttaacgaa 29116367  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
    |||||||||| ||||||| | ||||||||| |||||| ||| ||||||    
T  29116368 attgaaagacaagggtattcaaccaaatatgtacacatacagtattct 29116415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 29085025 - 29085182
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || |||| ||||| ||||||||||||||||| || ||||||||| ||||| ||||||  ||||||| |||||||||||  |||| ||    
T  29085025 atgatagaggtgtaccacctaatatacttacttacaattctataatagatgctttattcaaaacccatcaagttgacaaagcaattgcattgataacgaa 29085124  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||| |||||||||||||| | |||||  || |||||| |||||||||| |||||||||    
T  29085125 atttaaagaccagggtattcaaccaagcatgtacacatacactattcttattgatgga 29085182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 29348590 - 29348433
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || || ||||| |||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||| || ||||| ||    
T  29348590 atgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttgttaacgaa 29348491  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
      |||||||  | || || | |||| |||| |||||| |||||||||| |||||||||    
T  29348490 gatgaaagatgaaggaattcaaccagatatgtacacatacactattcttattgatgga 29348433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 29889737 - 29889894
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || |||| ||||| | |||||||||||||||||| ||||||||||||||| ||||||  |||||||  |||||||||| | ||| ||    
T  29889737 atgatagaggtgtaccacctaatatagtcacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaaacaattgcattgtcaacgaa 29889836  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||| ||||||||| |||| | ||||||| | || ||| |||||||||| |||||||||    
T  29889837 atttaaagaccagagtattcaaccaaatgtgtaaacatacactattcttattgatgga 29889894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 29946444 - 29946579
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||  ||| ||||||||| ||| || || ||||||||||||||| ||| ||||||||    
T  29946444 atgatagaggtcaaccacctaatataattacttacaactctatattggatgttttatgcaagaactatgatgttgacaaggcaattgtatttttaacaaa 29946543  T
Q  120 attgaaagaccagggtatccgaccaaatatttacac 155  Q
    | | |||||||||| ||| | ||||| ||| |||||    
T  29946544 acttaaagaccaggatattcaaccaagtatgtacac 29946579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 29898084 - 29898168
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaat 104  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  29898084 atgatagaggtcaaccacctaatataattacgtacagttctatattgaatgctttatgcaaaaaccatcaggttgacaaggcaat 29898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 29099350 - 29099465
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||||  || |||| |||||  ||||||||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||||| ||    
T  29099350 atgatagaggtgtaccacctaatatatgtacttacaattctatattagatgctttatgcaaaacccatcaagttgacaaagcaattgcattgttaacgaa 29099449  T
Q  120 attgaaagaccagggt 135  Q
    ||| |||||| |||||    
T  29099450 atttaaagacaagggt 29099465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 29366413 - 29366317
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaac 116  Q
    |||||||||||  || || ||||| |||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||| || |||||    
T  29366413 atgatagaggtgtaccacatgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttgttaac 29366317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 29876832 - 29876932
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    |||||||||| |||| |||| |||||||||||||||||||||||||  |||||||||||||||  |||||| |||| ||| | ||||||||||||| |||    
T  29876832 atgatagaggccaaccacctaatataattacttacaattctatattgtatgctttatgcaaaattcatcatgttgagaagacgattgcattattaagaaa 29876931  T
Q  120 a 120  Q
    |    
T  29876932 a 29876932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 30999930 - 30999838
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattat 112  Q
    ||||||||||||||| |||| ||||| ||| ||||| |||||||||  ||||||||||||||||||||| | ||||| |||||||||||||||    
T  30999930 atgatagaggtcaaccacctaatatagttatttacagttctatattggatgctttatgcaaaaaccatcgtgttgaccaggcaattgcattat 30999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 29949860 - 29949732
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaata 148  Q
    |||||||||||| ||||| ||||||||||||||||||||||  |||||||||| ||||||||||||| |||  | |||||||| || || |  |||||||    
T  29949860 acttacaattctttattagatgctttatgcaaaaaccatcaggttgacaaggcgattgcattattaaaaaagataaaagaccaaggaattcagccaaata 29949761  T
Q  149 tttacacacacactattctaattgatgga 177  Q
    | || ||| ||||||| ||  ||||||||    
T  29949760 tgtatacatacactatacttgttgatgga 29949732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 16702123 - 16702057
Alignment:
Q  44 taattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 110  Q
    |||| |||||||||||  ||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  16702123 taatcacttacaattccttattacatgctttatgtaaaaaccatcatgttgacaaggcaattgcatt 16702057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 24271939 - 24271853
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattg 106  Q
    ||||| |||| |||| |||||||||||| || |||| |||||||||  ||| ||||||||||||||||||  |||||||||||||||    
T  24271939 atgatcgagggcaacaacctgatataatcacgtacagttctatattggatgatttatgcaaaaaccatcaggttgacaaggcaattg 24271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 30149534 - 30149648
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| | | || ||||| |||||||||||| ||||  |||  || ||||||||||||||  |||||| ||||||||||||||||| |||    
T  30149534 atgatagaggtcaaccaaccgacataatcacttacaattctttatttgatggattgtgcaaaaaccatcaggttgacagggcaattgcattattaaaaaa 30149633  T
Q  120 attgaaagaccaggg 134  Q
      | |||||||||||    
T  30149634 gatcaaagaccaggg 30149648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 25451125 - 25451270
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||  ||||| ||||||||| |||||||||  |||||||||  ||||| |||||  ||||  | ||||||| |||||| | | |    
T  25451125 atgatagaggtcaaccaccaaatatatttacttacagttctatattggatgctttattgaaaaaacatcaggttgaagaagcaattgaattatttaaaga 25451224  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactatt 165  Q
    ||| |||||| ||||||| | ||||||| | |||||| ||||||||    
T  25451225 atttaaagacaagggtattcaaccaaatgtgtacacatacactatt 25451270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 29953657 - 29953542
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaata 148  Q
    |||||||||||| ||||  ||||||| ||||||||||||||  |||||||||| |||||||||||||  ||  |||||||||| || || |  |||||||    
T  29953657 acttacaattctttattggatgctttgtgcaaaaaccatcaggttgacaaggcgattgcattattaaagaagatgaaagaccaagggattcagccaaata 29953558  T
Q  149 tttacacacacactat 164  Q
    | || ||| |||||||    
T  29953557 tgtatacatacactat 29953542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 24271857 - 24271799
Alignment:
Q  119 aattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    ||||||||||||||||||| ||||||||||| | |||| |||||||||| |||||||||    
T  24271857 aattgaaagaccagggtattcgaccaaatatgttcacatacactattcttattgatgga 24271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 30053442 - 30053543
Alignment:
Q  28 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 127  Q
    ||||||| | || ||||||| |||||||||||| ||||| |||  || ||||||||||||||  |||||||||||||||| || ||||| ||  ||||||    
T  30053442 ggtcaaccagctaatataatcacttacaattctttattatatggattgtgcaaaaaccatcaggttgacaaggcaattgcgttgttaacgaagatgaaag 30053541  T
Q  128 ac 129  Q
    ||    
T  30053542 ac 30053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 29912051 - 29912126
Alignment:
Q  92 ttgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
    ||||||| |||||| ||||||||||||||||||||| ||| ||||| |||||| ||||  ||||| |||| |||||    
T  29912051 ttgacaaagcaattacattattaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacaccattct 29912126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 29914071 - 29914146
Alignment:
Q  92 ttgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 167  Q
    ||||||| ||||||||||| ||||| ||||| |||||||||||||| | ||||| | | |||||| ||||||||||    
T  29914071 ttgacaaagcaattgcattgttaacgaaatttaaagaccagggtattcaaccaagtgtgtacacatacactattct 29914146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 15727152 - 15727090
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    |||||||||||  || || ||||||||||||||||||||||  ||||||||||||||| ||||    
T  15727152 acttacaattcgttaatagatgctttatgcaaaaaccatcacgttgacaaggcaattgtatta 15727090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 30135161 - 30135250
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatca-tattgacaaggcaattgcattattaacaaaattgaaagaccagggtat 137  Q
    |||||||||||| ||||  ||||||| ||||||||||||||   |||||||||||||  |||||||||| ||  | |||||||| |||||    
T  30135161 acttacaattctttattggatgctttgtgcaaaaaccatcaggtttgacaaggcaatcacattattaacgaagatcaaagaccaaggtat 30135250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 4144 - 4301
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||  |||||||||||||||||||||    |||||||||||||||||||||||||||    
T  4144 atgatagaggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatccaggtgacaaggcaattgcattattaacaaa 4243  T
Q  120 attgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 177  Q
    |||||||||||||||| | | ||||||||| |||||| |||||||||| ||| |||||    
T  4244 attgaaagaccagggtcttcaaccaaatatgtacacatacactattcttattaatgga 4301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 22356 - 22497
Alignment:
Q  26 gaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaa 125  Q
    |||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||| | ||||| |||||| |||||||||||||||||||    
T  22356 gagggcaacaacctgatataattacttacaattctatattggatgctttatgcaaaaaacatcatgtggacaaagcaattacattattaacaaaattgaa 22455  T
Q  126 agaccagggtatccgaccaaatatttacacacacactattct 167  Q
    || ||| ||||| |||||| ||||  ||||| |||| |||||    
T  22456 aggccaaggtattcgaccagatatgaacacatacaccattct 22497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 24219236 - 24219116
Alignment:
Q  11 gagagaagaatgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 110  Q
    |||||| | ||||||||||||||| |||| |||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||| |||    
T  24219236 gagagatgcatgatagaggtcaaccacctaatataattacttacaattctttattggatgctttatgcaaaaaccatcatgttgacaaggcaattgaatt 24219137  T
Q  111 attaacaaaattgaaagacca 131  Q
     ||||||||| | ||||||||    
T  24219136 gttaacaaaacttaaagacca 24219116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 24226827 - 24226911
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaat 104  Q
    ||||||||||||||| | || | ||||| |||||||||||| ||||| |||  || ||||||||||||||  |||||||||||||    
T  24226827 atgatagaggtcaaccagctaacataatcacttacaattctttattagatggattgtgcaaaaaccatcaggttgacaaggcaat 24226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 33997967 - 33998037
Alignment:
Q  40 gatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 110  Q
    |||||||| ||||| |||||| ||||  |||||||||||||||| |||||| | ||| |||||||| ||||    
T  33997967 gatataatcacttataattctttattgcatgctttatgcaaaaatcatcatctcgaccaggcaattacatt 33998037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 16351086 - 16351214
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtatccgaccaaat 147  Q
    |||||||||||| |  || ||| ||| ||||||||||| ||| |||||||||| ||||||||| |||| |||||| ||||| || || || | |||||||    
T  16351086 acttacaattctttgatagatgttttctgcaaaaaccaacatgttgacaaggctattgcattagttaagaaaatt-aaagaacatggcattcaaccaaat 16351184  T
Q  148 atttacacacacactattctaattgatgga 177  Q
    || | |||| ||| ||| || |||||||||    
T  16351185 atgtgcacatacaatatacttattgatgga 16351214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 15062868 - 15062737
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaa 119  Q
    ||||||||||||||| | || |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||||||||  |||||||||||    
T  15062868 atgatagaggtcaaccatctaatataattacttacaattctatattagatgctatatgcaaaaacaatcatgttgataaggcaattgtgttattaacaaa 15062769  T
Q  120 attgaaagaccagggtatccgaccaaatattt 151  Q
    | | |||||  ||||||| | |||| ||||||    
T  15062768 aattaaagagaagggtattcaaccagatattt 15062737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 10130145 - 10130246
Alignment:
Q  21 tgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaa 120  Q
    |||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||||| |||| ||||    
T  10130145 tgatagaggtcaacaacctaatataattacttacaattctttattgaatgctttatgccaaaatcaccatgttgacaaagcaatcgcattgttaagaaaa 10130244  T
Q  121 tt 122  Q
    ||    
T  10130245 tt 10130246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 17251320 - 17251411
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    ||||||||||||||| |||| || |||| ||||||| |||| |  || ||||||| ||||||| ||||||  |||| |||||||||||||||    
T  17251320 atgatagaggtcaaccacctaatgtaataacttacacttctttgatagatgctttgtgcaaaagccatcaagttgataaggcaattgcatta 17251411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 19490258 - 19490374
Alignment:
Q  21 tgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaa 120  Q
    |||||||||||| | ||| ||| |||| ||||| |||||| ||||| |||||||||| ||||  ||||| |  ||||||||||| |||||| |||  |||    
T  19490258 tgatagaggtcagccacccgatgtaataacttataattctttattagatgctttatgtaaaagtcatcaaaccgacaaggcaatagcattactaagcaaa 19490357  T
Q  121 ttgaaagaccagggtat 137  Q
     ||||||| || |||||    
T  19490358 atgaaagatcaaggtat 19490374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 41316274 - 41316358
Alignment:
Q  28 ggtcaactacctgatataattacttacaattctatat-taaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    ||||||| ||||||||||   ||||||| |||| ||| || ||||||||||||||| | ||||| |||||||||| |||||||||    
T  41316274 ggtcaaccacctgatatatccacttacagttctttatatagatgctttatgcaaaagcaatcatcttgacaaggctattgcatta 41316358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 41198768 - 41198828
Alignment:
Q  40 gatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaagg 100  Q
    |||||||| | || ||||||  ||||| |||||||||| |||||||||||| |||||||||    
T  41198768 gatataatcagttgcaattccttattacatgctttatgtaaaaaccatcatgttgacaagg 41198828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 3241 - 3331
Alignment:
Q  21 tgatagaggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    |||||| ||||||| | |||||||||| |||||||||||  || || ||||||||||||||||||||||| |||||||||| |||||||||    
T  3241 tgatagtggtcaaccagctgatataatcacttacaattcattaatagatgctttatgcaaaaaccatcatgttgacaaggctattgcatta 3331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 53588 - 53532
Alignment:
Q  20 atgatagaggtcaactacctgatataattacttacaattctatattaaatgctttat 76  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  53588 atgatagaggtcaaccacctaatataattacttacaattctatattaaatgctttat 53532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 3643073 - 3643201
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtatccgaccaaat 147  Q
    |||||||||||| |  || ||| ||||||||||||||||||||||||||| || ||||||||| |||| |||||| ||||||||||| || | ||||| |    
T  3643073 acttacaattctttgatagatgttttatgcaaaaaccatcatattgacaaagctattgcattagttaagaaaatt-aaagaccagggcattcaaccaagt 3643171  T
Q  148 atttacacacacactattctaattgatgga 177  Q
    || |||||| ||| ||| || |||||||||    
T  3643172 atgtacacatacaatatacttattgatgga 3643201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 137389 - 137537
Alignment:
Q  28 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaa 126  Q
    ||||||| |||||| ||| |||| |||| |||| || || ||||||||||||||||| ||||| ||||||| || ||||||||| | || |||||| |||    
T  137389 ggtcaaccacctgacatatttacctacagttctttaatagatgctttatgcaaaaacaatcatcttgacaaagctattgcattagtcaagaaaatt-aaa 137487  T
Q  127 gaccagggtatccgaccaaatatttacacacacactattctaattgatgg 176  Q
    ||||| || || | ||||||||| |||||| ||| ||| || ||||||||    
T  137488 gaccaaggcattcaaccaaatatgtacacatacaatatacttattgatgg 137537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 104722 - 104652
Alignment:
Q  28 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaa 98  Q
    ||||||| |||| | ||| ||||||||| |||| || || ||||||||||||||||| ||||| |||||||    
T  104722 ggtcaaccacctaacatatttacttacagttctttaatagatgctttatgcaaaaacaatcatcttgacaa 104652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 121424 - 121382
Alignment:
Q  68 atgctttatgcaaaaaccatcatattgacaaggcaattgcatt 110  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  121424 atgctttatgcaaaaatcatcaagttgacaaggcaattgcatt 121382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 126086 - 126024
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    |||||||||||  || || |||||||||||||||||||||| ||||||||||| |||||||||    
T  126086 acttacaattccttaatagatgctttatgcaaaaaccatcagattgacaaggctattgcatta 126024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 6211 - 6294
Alignment:
Q  28 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    ||||||| |||||| |||   |||||||||||| || || |||| |||||||||||||||||| |||||||||| |||| ||||    
T  6211 ggtcaaccacctgacatatgcacttacaattctttaatagatgcattatgcaaaaaccatcatgttgacaaggctattgtatta 6294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 47866 - 47804
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 111  Q
    |||||||||||| || ||||| |||||||||||||| ||||  |||||||||| |||||||||    
T  47866 acttacaattctttaataaattctttatgcaaaaactatcaggttgacaaggctattgcatta 47804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 43269 - 43201
Alignment:
Q  28 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgac 96  Q
    ||||||| |||||| |||   |||||||||||| || || |||| |||||||||||||||||| |||||    
T  43269 ggtcaacaacctgacatatgcacttacaattctttaatagatgcattatgcaaaaaccatcatgttgac 43201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 44262556 - 44262489
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaac 116  Q
    |||||||||||  ||||  ||||||| ||||||||||||||  |||||||||||||  ||||||||||    
T  44262556 acttacaattccttattggatgctttgtgcaaaaaccatcaggttgacaaggcaatcacattattaac 44262489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 1183 - 1122
Alignment:
Q  49 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 110  Q
    |||||||||||  | ||| | |||||||| |||||||||||  |||||||||||||||||||    
T  1183 acttacaattccttcttacacgctttatgtaaaaaccatcaagttgacaaggcaattgcatt 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 9782594 - 9782655
Alignment:
Q  68 atgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagac 129  Q
    ||||||| ||||||| ||||||  |||||||||||||||| || ||||||||  ||||||||    
T  9782594 atgctttgtgcaaaatccatcaggttgacaaggcaattgcgttgttaacaaagatgaaagac 9782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 31264 - 31220
Alignment:
Q  62 tattaaatgctttatgcaaaaaccatcatattgacaaggcaattg 106  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||    
T  31264 tattacatgctttatgtaaaaaccatcatgttgacaaggccattg 31220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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