View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17132_high_3 (Length: 494)
Name: NF17132_high_3
Description: NF17132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17132_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 30 - 480
Target Start/End: Complemental strand, 41425041 - 41424591
Alignment:
| Q |
30 |
gaatcttcttgtattaatggttgctctacaaactcaacgagtggcatccattttgctgcatcaatttcaagatcatccacagtgatcgtatatgatagtg |
129 |
Q |
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| T |
41425041 |
gaatcttcttgtattaatggttgctctacaaactcaaccagtggcatccattttgctgcatcaatttcaagatcatccacagtgatcgtagatgatagtg |
41424942 |
T |
|
| Q |
130 |
gttttagcatgcagatgaagaacaaatctgatttctcaaaagccacattgtgtacatgcctagaatttatcatcaagttcatcagaattaataactacgt |
229 |
Q |
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| T |
41424941 |
gttttagcatgcagatgaagaacaaatctgatttctcaaaagccacattgtgtacatgcctagaatttatcatcaagttcatcagaattaataactacat |
41424842 |
T |
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| Q |
230 |
tgtataaatgtatattcacagaatcaatggtaactatttcaaatttatttcattcaaaattatgtaaatttcttgatgacatgattggtgttacctgaat |
329 |
Q |
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| T |
41424841 |
tgtataaatgtatattcacagaatcaatggtaactatttcaaatttatttcattcaaaattatgtaaatttcttgatgacatgattggtgttacctgaat |
41424742 |
T |
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| Q |
330 |
gctatgacttcgataaactctgtgtctatctgcaacatcaaaagaaagtcttcattttaagcaatcgaaacctatcatgcaaccttatgaataagttcaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41424741 |
gctatgacttcgataaactctgtgtctatctgcaacatcaaaagaaagtcttcattttaagcaatcgaaacctatcatgcaaccttatgaataagttcaa |
41424642 |
T |
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| Q |
430 |
tataaggctttttaatttaatttacatcaaaacttaagaatatctcaaagt |
480 |
Q |
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| T |
41424641 |
tataaggctttttaatttaatttacatcaaaacttaagattatctcaaagt |
41424591 |
T |
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