View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17132_high_5 (Length: 443)
Name: NF17132_high_5
Description: NF17132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17132_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 41744176 - 41743745
Alignment:
| Q |
12 |
ttatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataatatgtttgtcttgaca |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41744176 |
ttatattgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataatatgtttgtcttgaca |
41744077 |
T |
|
| Q |
112 |
ttgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41744076 |
ttgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgtgtattacttgatgagtttgtctctatacatgcatatagagt |
41743977 |
T |
|
| Q |
212 |
tgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatctctatcaacaatatatgatgacaatatgtgtggtaccacgttcat |
311 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
41743976 |
cgagtctaggaaaacgaagatgaaatgaagacaaatgtaagtccagtaacacatctctatcaacaatatatgatgacgatatgtgtgataccacgttcat |
41743877 |
T |
|
| Q |
312 |
atatgttttaagatgaagtccatctgcatatggatagagttgcactgctaaagtataatttaaaaatttacgttattaagtgataaaatgttgagtttat |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41743876 |
atatgtcttaagatgaagtccatctgcatatggatagagtcgcactgctaaagtataatttaaaaatttacgttattaagtgataaaatgttgagtttat |
41743777 |
T |
|
| Q |
412 |
aacaaactttttattaaatatattctttctta |
443 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
41743776 |
aacatactttttattaaatatattctttctta |
41743745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 24622317 - 24621979
Alignment:
| Q |
13 |
tatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataat------atgtttgtct |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||||||||| | | | |||||||| ||||||||||||||||| | || ||||||| || |
|
|
| T |
24622317 |
tatattgatgatgagaatgatgacgtgtaattatgatgatgatgagattgatgatgtttaccctttgatgacgatgagagtgatgaatatatgtttgcct |
24622218 |
T |
|
| Q |
107 |
tgacattgtacataatagggagagttttg---cattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgca |
203 |
Q |
| |
|
||| || | ||||||||| || | ||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||| |||| ||| ||||| |
|
|
| T |
24622217 |
tgatgttatgcataataggaaggctcttgttgcattaatatgtgaattgttgatgatgtgaaaatgtgtattacttgatgagtcggtcttcatgcatgca |
24622118 |
T |
|
| Q |
204 |
tatagagttgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatctctatcaacaatatatgatgacaatatgtgtggtacc |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||| | ||||| |||| ||||| |||||| ||||||| ||||||||| ||| ||||||||| |
|
|
| T |
24622117 |
tatagagttgagtctaggaaaaagaagatgaagagaagacgagtgtaaatccagtaacatatctctgacaacaatttatgatgacgataggtgtggtact |
24622018 |
T |
|
| Q |
304 |
acgttcatatatgttttaagatgaagtccatctgcatat |
342 |
Q |
| |
|
|| ||||||||||| || |||| |||| || ||||||| |
|
|
| T |
24622017 |
acattcatatatgtcataggatggagtcaatatgcatat |
24621979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 331
Target Start/End: Original strand, 34635732 - 34635965
Alignment:
| Q |
100 |
tttgtcttgacattgtacataatagggagagttttgcattaata-tgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatgg |
198 |
Q |
| |
|
|||||||||| | ||||||||||| | |||||| ||||| ||| |||||||| |||||||| ||| | || || ||||||||||||||||||| ||| |
|
|
| T |
34635732 |
tttgtcttgataatgtacataataagaagagtt--gcatttataatgtgaattgttgatgatatgatggtgtttaatacttgatgagtttgtctccatgc |
34635829 |
T |
|
| Q |
199 |
atgcatatagagttgagtctagg--aaaacgaagatgaaatggagacaaatgtaagtccaataacacatctct-atcaacaatatatgatgac-aatatg |
294 |
Q |
| |
|
|| |||||||||||| ||||||| |||| || ||||||||| |||| |||||||||||| |||||||||||| | ||||||| |||||||| || | | |
|
|
| T |
34635830 |
atacatatagagttgtgtctaggaaaaaatgaggatgaaatgaagacgaatgtaagtccagtaacacatctctgacaaacaata-atgatgacgaaaagg |
34635928 |
T |
|
| Q |
295 |
tgtggtaccacgttcatatatgttttaagatgaagtc |
331 |
Q |
| |
|
||||||||||| || ||||| || ||| ||||||||| |
|
|
| T |
34635929 |
tgtggtaccacatttatataggtcttaggatgaagtc |
34635965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 18785371 - 18785465
Alignment:
| Q |
173 |
attacttgatgagtttgtctctatggatgcatatagagttgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatct |
267 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||||||| |||||||| |||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
18785371 |
attacttgatgagtttgtctccatgcatgcatataaagttgagtttaggaaaatgaagatgaaatgaagacgaatgtaagtccagtaacacatct |
18785465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 18785223 - 18785348
Alignment:
| Q |
12 |
ttatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgag------aataatatgtttgtc |
105 |
Q |
| |
|
||||| |||| |||||||||| || |||||||| |||||| ||||| ||| | ||||||||||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
18785223 |
ttatattgattatgagaatgatgatgtctaattgtgatgaagatgagaatgatgatgtttactctttaatgacaatgagaatgataatgatatgtttgtt |
18785322 |
T |
|
| Q |
106 |
ttgacattgtacataatagggagagt |
131 |
Q |
| |
|
||||| |||| ||||||||||||||| |
|
|
| T |
18785323 |
ttgacgttgtgcataatagggagagt |
18785348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 22521627 - 22521540
Alignment:
| Q |
100 |
tttgtcttgacattgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtat-tacttgatgagt |
186 |
Q |
| |
|
|||||||||| | || ||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
22521627 |
tttgtcttgatgtcgtgcataataggaagagtcttgcattgatatgtgaattgttgatcatgtgaagacgtgtatatacttgatgagt |
22521540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 19019729 - 19019617
Alignment:
| Q |
100 |
tttgtcttgacattgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtat-tacttgatgagtttgtctctatgg |
198 |
Q |
| |
|
|||||||||| |||| ||||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||| || |
|
|
| T |
19019729 |
tttgtcttgatgttgtgcataataggaatagtcttgcattaatatgtgaattgttgatgatgtgaagatgtgtatatacttgatgagttagtcttcatac |
19019630 |
T |
|
| Q |
199 |
atgcatatagagt |
211 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19019629 |
atgcatatagagt |
19019617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 33499706 - 33499810
Alignment:
| Q |
117 |
cataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgagt |
216 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||| ||||||||||| | || |||||||||| |||| |||||| ||| |||||||||||||||| | |
|
|
| T |
33499706 |
catattagggagagtctagcattaatatgtgaattgttgatgatgtgcaaatatgtattacttgtcgagtatgtctccatgcatgcatatagagttgatt |
33499805 |
T |
|
| Q |
217 |
ctagg |
221 |
Q |
| |
|
||||| |
|
|
| T |
33499806 |
ctagg |
33499810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 43155284 - 43155380
Alignment:
| Q |
136 |
cattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgagtctaggaaaacgaagatg |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||||| ||||| |||||| || |||||| ||| |||||| ||||||||| ||||||| |
|
|
| T |
43155284 |
cattaatatgtgaattgttgatgatgtgaaggcgtgtattacttgttgagtctgtctccat-catgcatttagggttgagcctaggaaaaagaagatg |
43155380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University