View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_high_12 (Length: 407)

Name: NF17133_high_12
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17133_high_12
NF17133_high_12
[»] chr4 (2 HSPs)
chr4 (15-97)||(51682794-51682876)
chr4 (43-97)||(30164082-30164133)
[»] chr6 (2 HSPs)
chr6 (19-101)||(1100083-1100162)
chr6 (19-105)||(18101319-18101402)
[»] chr3 (2 HSPs)
chr3 (19-103)||(24163115-24163196)
chr3 (19-103)||(55201112-55201193)
[»] chr8 (2 HSPs)
chr8 (15-105)||(31146406-31146493)
chr8 (19-99)||(12295420-12295496)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 51682876 - 51682794
Alignment:
Q  15 ggtttagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatctt 97  Q
    |||| |||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  51682876 ggttaagattaaaaaacatattttagataacacatgtgtctttccacatgctatcctcaatcatccattcaacttctaatctt 51682794  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 30164133 - 30164082
Alignment:
Q  43 aacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatctt 97  Q
    ||||||| |||||||||||||||||||||||   |||||||||||||||||||||    
T  30164133 aacacatatgcctttccacatgctatcctca---atccattcaacttctcatctt 30164082  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 1100083 - 1100162
Alignment:
Q  19 tagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatcttctct 101  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||   ||||||||| |||||||||||||||    
T  1100083 tagattaaaaaacttattttagataacacatatgcctttccacatgctatcctca---atccattcaccttctcatcttctct 1100162  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 18101402 - 18101319
Alignment:
Q  19 tagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatcttctctaacc 105  Q
    |||||||||| |||||||||| ||||||    ||||||||||||||||||| |||| |    ||||||||||| |||||||| ||||    
T  18101402 tagattaaaatacttattttaaataacaagcatgcctttccacatgctatcatcaacct---attcaacttctgatcttctccaacc 18101319  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 24163196 - 24163115
Alignment:
Q  19 tagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatcttctctaa 103  Q
    |||||||||||||||||||||  |||||||| || ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  24163196 tagattaaaaaacttattttagttaacacatatgtctttccacatgctatcctca---atccattcaacttctcatcttctctaa 24163115  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 55201112 - 55201193
Alignment:
Q  19 tagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatcttctctaa 103  Q
    |||||||||||||||||||||  ||||| || || ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  55201112 tagattaaaaaacttattttagttaacagatatgtctttccacatgctatcctca---atccattcaacttctcatcttctctaa 55201193  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 31146406 - 31146493
Alignment:
Q  15 ggtttagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatcttctctaacc 105  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||   | ||||||| |||||||||||||| ||||    
T  31146406 ggtttagattaaaaaacttaatttatataacacatgtgccttttcacatgctatcctca---acccattcaccttctcatcttctccaacc 31146493  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 12295420 - 12295496
Alignment:
Q  19 tagattaaaaaacttattttacataacacatgtgcctttccacatgctatcctcaatcatccattcaacttctcatcttct 99  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||    || ||||||||||||||||||    
T  12295420 tagattaaaaaacttattttagataacacatattcctttccacatgttatcctcaa----cccttcaacttctcatcttct 12295496  T

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