View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17133_high_21 (Length: 282)
Name: NF17133_high_21
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_high_21 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 138950 - 138833
Alignment:
| Q |
5 |
caaattttattagcgccgagtcagtgcaagacgcacctaacaactctaagcgacagaaaaacatacacacccaatagatatggaccaaaccgcacataca |
104 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
138950 |
caaattttattagcgccaagccggtgcaagacgcacctaacaactctaagcgacagaaaaacataaacacccaataggtatggaccaaaccgcacataca |
138851 |
T |
|
| Q |
105 |
aatgaaagcagccgcaga |
122 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
138850 |
aatgaaagcagctgcaga |
138833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 138795 - 138727
Alignment:
| Q |
202 |
aaagagccctccaacccgcagctagccaccacccgcaactctaaaagtcatcgcaaccagcactccctt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
138795 |
aaagagccctccaacccgcagctagccaccacccgcaactctaaaagtcatcacaacaagcactccctt |
138727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University