View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_high_22 (Length: 279)
Name: NF17133_high_22
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 53434228 - 53434478
Alignment:
| Q |
12 |
agaatatcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttgcttcattttttg |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53434228 |
agaaaatcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttacttcattttttg |
53434327 |
T |
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| Q |
112 |
ataagcgggctgcgaagcctgagaatccgtatttatagttgtgtactagagctttttcattcctaaacc---cattcacatatcatcaataaaattagtt |
208 |
Q |
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| T |
53434328 |
ataagcgggctgcgaagcctgagaatccgtatttatagttgtgtactagagctttttcattcctaaaccattcattcacatatcatcaataaaattagtt |
53434427 |
T |
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| Q |
209 |
aatcacatttcacaatagtactagctaattgaatatcatatatattaatta |
259 |
Q |
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| T |
53434428 |
aatcacatttcacaatagtactagctaattgaatatcatatatattaatta |
53434478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 26099168 - 26099344
Alignment:
| Q |
12 |
agaatatcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttgcttcattttttg |
111 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
26099168 |
agaaaatcccaagaacgtgttgtgtgaagctttaggatgggatccagaaacacagacacaactccaggttgttgagcaattgaatttgcttcattttttg |
26099267 |
T |
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| Q |
112 |
ataagcgggctgcgaagcctgagaatccgtatttatagttgtgtactagagctttttcattcctaaacccattcacat |
189 |
Q |
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| T |
26099268 |
ataaacgagctgcgaagcctgagaatccgtatttgtagttgtgtactagagctttttcattcctaaa-ccattcacat |
26099344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 48371004 - 48370842
Alignment:
| Q |
17 |
atcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttgcttcattttttgataag |
116 |
Q |
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|||||||||| | ||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||| ||||| |
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| T |
48371004 |
atcccaagaatgagttgtgtgaagcttcagaatgggatctggaaacacagacacaactccaggttgttgagcaattgaggctgcttcatttttcgataaa |
48370905 |
T |
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| Q |
117 |
cgggctgcgaagcctgagaatccgtatttatagttgtgtactagagctttttcattcctaaac |
179 |
Q |
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| T |
48370904 |
cgagctgcgaagcctgagaatccgtgcttatagttatgtactagagctttttcattcctaaac |
48370842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 53426072 - 53426233
Alignment:
| Q |
17 |
atcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttgcttcattttttgataag |
116 |
Q |
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| T |
53426072 |
atcccaagaacgtgttgtatggagcttcagaatgggatcagggaagacagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaa |
53426171 |
T |
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| Q |
117 |
cgggctgcgaagcctgagaatccgtatttatagttgtgtactagagctttttcattcctaaa |
178 |
Q |
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| T |
53426172 |
cgagccgcaaagcctgagaatccgtgtttgtagttatgtactagagctttctcattcctaaa |
53426233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 53321765 - 53321909
Alignment:
| Q |
12 |
agaatatcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttgcttcattttttg |
111 |
Q |
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| T |
53321765 |
agaaaatcccaagaacgtgttgtgtggagtttcaggatggaattgggaaacacggacacaactccaggttgttgagctattgagtttgcttcatgttttg |
53321864 |
T |
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| Q |
112 |
ataagcgggctgcgaagcctgagaatccgtatttatagttgtgta |
156 |
Q |
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| T |
53321865 |
atagaagagctgcaaaacctgagaatccatgtttgtagttgtgta |
53321909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 53310833 - 53310931
Alignment:
| Q |
17 |
atcccaagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttgcttcattttttgataa |
115 |
Q |
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|||||||||||||||||| | ||||||||| |||||||| | || |||| |||||||||| |||| ||||||| | | ||||||||||||||| |||| |
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| T |
53310833 |
atcccaagaacgtgttgtatgaagctttagaatgggatcgaggaagacagccacaactccatgttgatgagcaattgagtttgcttcattttttaataa |
53310931 |
T |
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