View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_high_23 (Length: 263)
Name: NF17133_high_23
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 8921710 - 8921944
Alignment:
| Q |
11 |
gcataggtggaatgatacaggtgatcaccgatgtgtattatcttccacgtttgaagaacaatttgttaagtataggtcaattgcagcagaagaatcttac |
110 |
Q |
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| T |
8921710 |
gcataggtggaatgatacaggtgatcaccgatgtgtattatttttcaggtttgaggaacaatttgttgagtataggtcaattgcagcagaagaatcttac |
8921809 |
T |
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| Q |
111 |
tactgtattttctgaagatagttgcaaattctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgca |
210 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921810 |
tacattattttctaaagatagttgcaaattctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgca |
8921909 |
T |
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| Q |
211 |
gctgctgtgattcctatgtgtttgaaaggtgcatg |
245 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
8921910 |
gctgttgtgattcctatgtgtttgaaaggtgcatg |
8921944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 7621884 - 7621650
Alignment:
| Q |
11 |
gcataggtggaatgatacaggtgatcaccgatgtgtattatcttccacgtttgaagaacaatttgttaagtataggtcaattgcagcagaagaatcttac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7621884 |
gcataggtggaatgatacaggtgatcaccgatgtgtattatatttcaggtttgaggaacaatttgttgagtataggtcaattgcagcagaagaatcttac |
7621785 |
T |
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| Q |
111 |
tactgtattttctgaagatagttgcaaattctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgca |
210 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621784 |
tacattattttctaaagatagttgcaaattctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgca |
7621685 |
T |
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| Q |
211 |
gctgctgtgattcctatgtgtttgaaaggtgcatg |
245 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
7621684 |
gctgctgtggttcctatgtgtttgaaaggtgcatg |
7621650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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