View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17133_high_26 (Length: 250)
Name: NF17133_high_26
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33984320 - 33984557
Alignment:
| Q |
1 |
cacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtaccacatttcatttctaattcatattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33984320 |
cacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtaccacatttcatttctaattcatattctt |
33984419 |
T |
|
| Q |
101 |
acttttacatttgcttcaatttagtactaagggacaaaatcgccatggtttttaatgtttaaactaatttattgatttaatcaaattatcattttttgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33984420 |
acttttacatttgcttcaatttagtactaagggacaaaatcgccatggtttttaatgtttaaactaatttattgatttaatcaaattatcattttttgca |
33984519 |
T |
|
| Q |
201 |
gcctcaacatcaatggcttggaaacgatgatagcccta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33984520 |
gcctcaacatcaatggcttggaaacgatgatagcccta |
33984557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33993886 - 33993958
Alignment:
| Q |
1 |
cacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtac |
73 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
33993886 |
cacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtac |
33993958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 33994015 - 33994093
Alignment:
| Q |
158 |
tttaaactaatttattgatttaatcaaattatcattttttgcagcctcaacatcaatggcttggaaacgatgatagccct |
237 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
33994015 |
tttaaactaatctattgacttaatcaaattattatttt-tgcagcctcaacatcaatgggtgggaaatgatgatagccct |
33994093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 34016126 - 34016190
Alignment:
| Q |
8 |
ttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggta |
72 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||||| || ||||||||| |||||||||| |
|
|
| T |
34016126 |
ttgattcttttaacaggcaacatggaaaatgcagagattcaaattgatgctctagccatatggta |
34016190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University