View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_high_31 (Length: 243)

Name: NF17133_high_31
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17133_high_31
NF17133_high_31
[»] chr1 (3 HSPs)
chr1 (1-225)||(33406293-33406517)
chr1 (74-144)||(30956660-30956730)
chr1 (80-159)||(16708026-16708105)
[»] chr4 (1 HSPs)
chr4 (78-144)||(24223659-24223725)
[»] chr3 (1 HSPs)
chr3 (70-117)||(30726615-30726662)
[»] chr7 (1 HSPs)
chr7 (74-144)||(23010892-23010962)
[»] chr5 (1 HSPs)
chr5 (72-117)||(34522639-34522684)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33406517 - 33406293
Alignment:
Q  1 catagtttcatcattggtgtagaatttagttccaatttgtgatgaagaagaatttggttgcttactagccttagctctatctttcctatgaatattcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406517 catagtttcatcattggtgtagaatttagttccaatttgtgatgaagaagaatttggttgcttactagccttagctctatctttcctatgaatattcatg 33406418  T
Q  101 tgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaatgtgcattcataagaacgtctttttccttgatcatatccatcatcaccttcttcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406417 tgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaatgtgcattcataagaacgtctttttccttgatcatatccatcatcaccttcttcac 33406318  T
Q  201 ttgaataattcatgttactaaaaca 225  Q
    |||||||||||||||||||||||||    
T  33406317 ttgaataattcatgttactaaaaca 33406293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 30956660 - 30956730
Alignment:
Q  74 gctctatctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaa 144  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||| ||||||||||||||    
T  30956660 gctctatcttttctatgaatgttcatgtgtccacctaaagcttgagcagttgtgaaacctcttttgcaaaa 30956730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 16708026 - 16708105
Alignment:
Q  80 tctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaatgtgcattcataaga 159  Q
    ||||||||||||||||||||||| || ||||| ||    ||||| ||||| || ||||||||||||||||| ||||||||    
T  16708026 tctttcctatgaatattcatgtggcctcctaatgccctagcattagtgaaaccccttttgcaaaatgtgcaatcataaga 16708105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 24223659 - 24223725
Alignment:
Q  78 tatctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaa 144  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||| | ||||||||| ||||||||    
T  24223659 tatctttcctatgaatattcatgtgtccaccaagagcttgtgcattagagaatcctctcttgcaaaa 24223725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 30726615 - 30726662
Alignment:
Q  70 cttagctctatctttcctatgaatattcatgtgaccacctaaagcttg 117  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  30726615 cttagctctatctcttctatgaacattcatgtgaccacctaaagcttg 30726662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 23010892 - 23010962
Alignment:
Q  74 gctctatctttcctatgaatattcatgtgaccacctaaagcttgtgcatttgtgaatcctcttttgcaaaa 144  Q
    ||||||||| | ||||| ||||||||||| || ||||| ||||||||||| | ||||||||| ||||||||    
T  23010892 gctctatctcttctatggatattcatgtggcctcctaatgcttgtgcattagagaatcctctcttgcaaaa 23010962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 34522684 - 34522639
Alignment:
Q  72 tagctctatctttcctatgaatattcatgtgaccacctaaagcttg 117  Q
    ||||||||||| ||||||||||||||||||||||||| | ||||||    
T  34522684 tagctctatctctcctatgaatattcatgtgaccaccaagagcttg 34522639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University