View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_high_5 (Length: 449)
Name: NF17133_high_5
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 211 - 439
Target Start/End: Complemental strand, 26113215 - 26112987
Alignment:
| Q |
211 |
ttttggttgtgcttttgcaggtactcattctcagttgtttctaaggatgaaattccactaaatgaatatgcttttcgaatttccggtagtaccaccattc |
310 |
Q |
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| T |
26113215 |
tttttgttgtgattttgcaggtattcattctcagttgtttctaaggatgaaattccactaaatgaatatgcttttcgaatttccggtagtgcctccattc |
26113116 |
T |
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| Q |
311 |
ttttattttaatgctcattactcattgttgcataccaggttttatatttaacaattaattagttgttagaaatgttagtacttagcgagggtattcgaac |
410 |
Q |
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| T |
26113115 |
ttttattttaatgctcattactcattgttgcataccaggttttatatttaacaactaattagttgttagaaatattagtacttcgcgagggtattcgaac |
26113016 |
T |
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| Q |
411 |
ccacaatctctatctatccggttcctatg |
439 |
Q |
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| T |
26113015 |
ccacaatctctatctctccggttcctatg |
26112987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 26113443 - 26113250
Alignment:
| Q |
19 |
gttgttgtagaaagtggaagatcatgattaagaaatctgttttgaattggagttttccttactgttgattgacgaaagattctgcgcaattattgattca |
118 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26113443 |
gttgttgtagaaagtggaaaatcataattaagaaatctgttttgaattggagttttccttactgttgattgacgaaagattctgcgcaattattgattca |
26113344 |
T |
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| Q |
119 |
tatgaaaaggactcaatctaaattttattacatataaaagaagtgtccaacaaccaatgtaacataatttatatgcagagttttttaatttatt |
212 |
Q |
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| T |
26113343 |
tatgaaaaggactcaatctaaattttattacatataaaagaagtgtccaacaaccaatgtaacatgatttatatgcagagttttttaatttatt |
26113250 |
T |
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