View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_high_9 (Length: 417)

Name: NF17133_high_9
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17133_high_9
NF17133_high_9
[»] chr7 (5 HSPs)
chr7 (7-400)||(19780411-19780804)
chr7 (14-130)||(14738471-14738587)
chr7 (65-163)||(19723481-19723579)
chr7 (5-86)||(19886489-19886570)
chr7 (126-163)||(14738409-14738446)
[»] chr3 (2 HSPs)
chr3 (7-397)||(32577659-32578049)
chr3 (279-386)||(12733823-12733930)
[»] chr6 (1 HSPs)
chr6 (266-400)||(14750279-14750413)
[»] chr2 (3 HSPs)
chr2 (203-400)||(18919817-18920006)
chr2 (32-160)||(18912447-18912571)
chr2 (334-391)||(18912729-18912786)
[»] scaffold0464 (1 HSPs)
scaffold0464 (279-386)||(8840-8947)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 400
Target Start/End: Complemental strand, 19780804 - 19780411
Alignment:
Q  7 tagattatactacaatatcattatcaagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaactagtataaacaaaactaaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19780804 tagattatactacaatatcattatcaagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaactagtataaacaaaactaaac 19780705  T
Q  107 caagaagaatatcaaatacatatacaattatttacaaaagcattttcatgcttaaaatgtaacaggataacacttttttgtttgttttctacaggatccc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19780704 caagaagaatatcaaatacatatacaattatttacaaaagcatattcatgcttaaaatgtaacaggataacacttttttgtttgttttctacaggatccc 19780605  T
Q  207 actactggaggtaatcctattcgaggtgcaacaaacacttgaatgtggacatatttcccagctgagattcaaaccttggttctccatgttgtgggagtct 306  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19780604 tctactggaggtaatcctattcgaggtgcaacaaacacttgaatgtggacatatttcccagctgagattcaaaccttggttctccgtgttgtgggagtct 19780505  T
Q  307 agtctctttggctagactcaaaaggtcaaaccttgttggttaactcaacttattctattagaaaacaattggtactcattccaaagctttgttc 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19780504 agtctctttggctagactcaaaaggtcaaaccttgttgattaactcaacttattctattagaaaacaattggtactcattccaaagctttgttc 19780411  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 14738587 - 14738471
Alignment:
Q  14 tactacaatatcattatcaagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaactagtataaacaaaactaaaccaagaag 113  Q
    ||||||||  |||||| |||||||||||||| ||||  |||||||||||||  |||||  |||| ||||||| | ||||||||||||||||||||| |||    
T  14738587 tactacaacttcattaacaagtacaaaaatgaaatagtcattgtttccaaacctagttctgatatacttgaattggtataaacaaaactaaaccaaaaag 14738488  T
Q  114 aatatcaaatacatata 130  Q
    ||||||||||| |||||    
T  14738487 aatatcaaatatatata 14738471  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 19723579 - 19723481
Alignment:
Q  65 attagtttggataaacttgaactagtataaacaaaactaaaccaagaagaatatcaaatacatatacaattatttacaaaagcattttcatgcttaaaa 163  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||  ||||| ||||   ||||||||||||||||    
T  19723579 attagtttgaatatacttgaactggtataaacaaaactaaaccaagaagaatatcaaatacacacacacatatttgcaaagatattttcatgcttaaaa 19723481  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 19886489 - 19886570
Alignment:
Q  5 ggtagattatactacaatatcattatcaagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaac 86  Q
    ||||||||  |||||||||||||||||||||||||||||  || || ||| || | ||||||||||||||||| ||| ||||    
T  19886489 ggtagatttgactacaatatcattatcaagtacaaaaataaaaaaatcatcgtgttcaaaattagtttggatatactagaac 19886570  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 14738446 - 14738409
Alignment:
Q  126 atatacaattatttacaaaagcattttcatgcttaaaa 163  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  14738446 atatagaattatttgcaaaagcattttcatgcttaaaa 14738409  T

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Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 32577659 - 32578049
Alignment:
Q  7 tagattatactacaatatcattatcaagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaactagtataaacaaaactaaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  32577659 tagattatactacaatatcattatcaagtacaaaaatgtaataaccattgtctccaaagttagtttggataaacttgaactagtataaacaaaactaaac 32577758  T
Q  107 caagaagaatatcaaatacatatacaattatttacaaaagcattttcatgcttaaaatgtaacaggataacacttttttgtttgttttctacaggatccc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  32577759 caagaagaatatcaaatacatatacaattatttacaaaagcattttcatgcttaaaatgtaattggataacacttttttgtttgttttctacaggatccc 32577858  T
Q  207 actactggaggtaatcctattcgaggtgcaacaaacacttgaatgtggacatatttcccagctgagattcaaaccttggttctccatgttgtgggagtct 306  Q
     ||||||||||||||||||||||||||||  |||||||||||||||||| |  ||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  32577859 tctactggaggtaatcctattcgaggtgcgtcaaacacttgaatgtggatacctttcctagctgagattcaaacctaggttctacatgttgtgggagtct 32577958  T
Q  307 agtctctttggctagactcaaaaggtcaaaccttgttggttaactcaacttattctattagaaaacaattggtactcattccaaagctttg 397  Q
    || |||||||||||||  ||||  | |||||| |||||||||||||||||||||| || |||||||| | |||||||||||||||||||||    
T  32577959 agcctctttggctagaaccaaacagccaaaccatgttggttaactcaacttattcgatcagaaaacagtcggtactcattccaaagctttg 32578049  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 12733823 - 12733930
Alignment:
Q  279 accttggttctccatgttgtgggagtctagtctctttggctagactcaaaaggtcaaaccttgttggttaactcaacttattctattagaaaacaattgg 378  Q
    |||||| |||||||  |||||||||||| | || ||  ||||||| |||   | |||| |||||| |||||||||| |||||||||||| |||||  |||    
T  12733823 accttgattctccacattgtgggagtcttgccttttctgctagacccaatcagccaaatcttgtttgttaactcaatttattctattaggaaacagatgg 12733922  T
Q  379 tactcatt 386  Q
    ||||||||    
T  12733923 tactcatt 12733930  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 14750413 - 14750279
Alignment:
Q  266 agctgagattcaaaccttggttctccatgttgtgggagtctagtctctttggctagactcaaaaggtcaaaccttgttggttaactcaacttattctatt 365  Q
    |||| ||||||| || ||||||||||| ||| ||||||||||| |||||   ||| ||  |||  |||||||||||||||||||||||| |||||||| |    
T  14750413 agctaagattcagacattggttctccacgttatgggagtctagcctcttctactacaccgaaatagtcaaaccttgttggttaactcaatttattctact 14750314  T
Q  366 agaaaacaattggtactcattccaaagctttgttc 400  Q
    | |||| | |||||||||||||||||||| |||||    
T  14750313 aaaaaatagttggtactcattccaaagctctgttc 14750279  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 400
Target Start/End: Original strand, 18919817 - 18920006
Alignment:
Q  203 tcccactactggaggtaatcctattcgaggtgcaacaaacacttgaatgtggacatatttcccagctgagattcaaaccttggttctccatgttgtggga 302  Q
    |||| ||||||||||||||| |||| ||||||   || |||||  |||||||| |  |||||||||| |||||  ||||||||||||||| |||| | ||    
T  18919817 tccctctactggaggtaatcatatttgaggtgtgtcagacactaaaatgtggatacctttcccagctaagatttgaaccttggttctccacgttgcgtga 18919916  T
Q  303 gtctagtctctttggctagactcaaaaggtcaaaccttgttggttaactcaacttattctattagaaaacaattggtactcattccaaagctttgttc 400  Q
    |||||| |||||  |||||||         |||||||||||||||||||||| | ||| |||||||||| | ||| ||  ||||||||| || |||||    
T  18919917 gtctagcctcttctgctagac--------ccaaaccttgttggttaactcaattcattatattagaaaatagttgatatgcattccaaacctctgttc 18920006  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 18912447 - 18912571
Alignment:
Q  32 aagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaactagtataaacaaaactaaaccaagaagaatatcaaatacatatac 131  Q
    ||||||||||||  ||||| ||||| || ||||| ||||||||| | | ||||| | |||  | ||||  ||||| ||||| |||||||||||  |||||    
T  18912447 aagtacaaaaattaaataagcattgctttcaaaactagtttggaaatatttgaagtggta--atcaaagataaacaaagaataatatcaaata--tatac 18912542  T
Q  132 aattatttacaaaagcattttcatgctta 160  Q
    |||||||| ||||||| ||||||||||||    
T  18912543 aattatttgcaaaagctttttcatgctta 18912571  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 18912729 - 18912786
Alignment:
Q  334 aaaccttgttggttaactcaacttattctattagaaaacaattggtactcattccaaa 391  Q
    ||||||||||||||||| ||| ||||||| | |||||| | |||||||||||||||||    
T  18912729 aaaccttgttggttaacacaatttattctgtaagaaaatagttggtactcattccaaa 18912786  T

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Target: scaffold0464 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 8947 - 8840
Alignment:
Q  279 accttggttctccatgttgtgggagtctagtctctttggctagactcaaaaggtcaaaccttgttggttaactcaacttattctattagaaaacaattgg 378  Q
    |||||| |||||||  |||||||||||| | || ||  ||||||| ||||  | |||| ||||||||||||||||| |||||||||||| |||||  |||    
T  8947 accttgattctccacattgtgggagtcttgccttttctgctagacccaaacagccaaatcttgttggttaactcaatttattctattaggaaacagatgg 8848  T
Q  379 tactcatt 386  Q
    ||||||||    
T  8847 tactcatt 8840  T

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