View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_low_1 (Length: 708)

Name: NF17133_low_1
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17133_low_1
NF17133_low_1
[»] chr4 (60 HSPs)
chr4 (393-663)||(48734899-48735169)
chr4 (27-138)||(48864877-48864988)
chr4 (469-671)||(45365784-45365986)
chr4 (31-215)||(45371131-45371326)
chr4 (625-692)||(48705102-48705169)
chr4 (538-667)||(7790379-7790508)
chr4 (432-604)||(49038411-49038577)
chr4 (552-676)||(48156076-48156200)
chr4 (552-667)||(7771694-7771809)
chr4 (430-665)||(48870861-48871096)
chr4 (430-665)||(48876165-48876400)
chr4 (38-183)||(48146910-48147066)
chr4 (145-223)||(48853459-48853537)
chr4 (421-664)||(48147235-48147472)
chr4 (294-382)||(48734767-48734855)
chr4 (27-90)||(48734493-48734556)
chr4 (197-364)||(48864686-48864846)
chr4 (430-665)||(48886547-48886782)
chr4 (42-201)||(48155562-48155730)
chr4 (469-604)||(45371638-45371773)
chr4 (27-132)||(48871500-48871606)
chr4 (27-132)||(48876804-48876910)
chr4 (552-621)||(7878728-7878797)
chr4 (552-604)||(7908664-7908716)
chr4 (34-86)||(48160479-48160531)
chr4 (421-604)||(48853043-48853226)
chr4 (560-671)||(45384547-45384664)
chr4 (418-604)||(49043681-49043867)
chr4 (418-604)||(49048068-49048254)
chr4 (556-665)||(7773476-7773585)
chr4 (34-131)||(47208773-47208870)
chr4 (65-201)||(48170187-48170334)
chr4 (145-209)||(7772965-7773029)
chr4 (139-230)||(48899526-48899618)
chr4 (552-604)||(50666677-50666729)
chr4 (557-604)||(48864397-48864444)
chr4 (552-662)||(7237390-7237500)
chr4 (27-132)||(48887186-48887292)
chr4 (538-604)||(48903317-48903383)
chr4 (136-213)||(49040378-49040455)
chr4 (557-670)||(50672794-50672907)
chr4 (552-604)||(7800999-7801051)
chr4 (552-604)||(7813839-7813891)
chr4 (44-120)||(43595969-43596045)
chr4 (149-229)||(48871388-48871468)
chr4 (149-229)||(48876692-48876772)
chr4 (28-92)||(49043363-49043427)
chr4 (137-211)||(45365269-45365343)
chr4 (469-499)||(45384454-45384484)
chr4 (149-227)||(48887076-48887154)
chr4 (249-315)||(49106107-49106173)
chr4 (147-212)||(7787475-7787540)
chr4 (145-226)||(48889457-48889538)
chr4 (552-604)||(7786826-7786878)
chr4 (154-214)||(37826188-37826248)
chr4 (137-229)||(45384080-45384171)
chr4 (556-604)||(47208239-47208287)
chr4 (143-183)||(47208710-47208750)
chr4 (437-517)||(48899189-48899269)
chr4 (166-218)||(49058046-49058097)
[»] chr5 (8 HSPs)
chr5 (12-123)||(29697149-29697261)
chr5 (12-85)||(29711578-29711651)
chr5 (538-662)||(9120067-9120191)
chr5 (12-226)||(29688921-29689145)
chr5 (562-660)||(179364-179462)
chr5 (557-600)||(42561985-42562028)
chr5 (27-92)||(9120673-9120739)
chr5 (261-364)||(29696896-29697001)
[»] chr8 (2 HSPs)
chr8 (408-517)||(4030291-4030400)
chr8 (158-328)||(4029986-4030160)
[»] chr3 (5 HSPs)
chr3 (416-499)||(47451411-47451494)
chr3 (552-604)||(11024150-11024202)
chr3 (557-604)||(11005580-11005627)
chr3 (27-67)||(11004994-11005034)
chr3 (552-604)||(11015138-11015190)
[»] chr1 (8 HSPs)
chr1 (152-211)||(24381868-24381927)
chr1 (552-611)||(24416133-24416192)
chr1 (32-89)||(24368006-24368064)
chr1 (145-183)||(24341224-24341262)
chr1 (145-183)||(24353589-24353627)
chr1 (552-597)||(24323139-24323184)
chr1 (552-600)||(24310582-24310630)
chr1 (552-600)||(24367531-24367579)
[»] chr6 (4 HSPs)
chr6 (34-92)||(14197230-14197288)
chr6 (27-80)||(21017301-21017354)
chr6 (559-599)||(14197337-14197377)
chr6 (552-604)||(21016183-21016235)
[»] chr2 (3 HSPs)
chr2 (261-328)||(29351111-29351178)
chr2 (408-489)||(29350899-29350980)
chr2 (192-229)||(29351214-29351251)
[»] chr7 (2 HSPs)
chr7 (146-214)||(48884652-48884720)
chr7 (252-304)||(48884563-48884615)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 60)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 393 - 663
Target Start/End: Original strand, 48734899 - 48735169
Alignment:
Q  393 cttcaaattcgcatgaatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgct 492  Q
    ||||||||||  | ||||||  ||||| ||||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||||||||  |    
T  48734899 cttcaaattcagaagaataggggcgatgctctagcagctgtcctttgtcattgtacctcaccaatccagtctcctgatctgttccaataatatcaccatt 48734998  T
Q  493 ttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatc 592  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| |||| ||||||||| || ||||||    
T  48734999 ttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T
Q  593 acccatatttcatctctattattaccataatctatagcactaaaactgagaagttctccaaatacccacaa 663  Q
      ||||||   | || ||||||||| | |||  ||||    ||||||||||| ||||||||||||||||||    
T  48735099 gtccatatcataactgtattattactaaaattcatagtcgaaaaactgagaaattctccaaatacccacaa 48735169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 48864988 - 48864877
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagtt 126  Q
    |||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  48864988 gattttgatcttgatcaacatgcaaacattcagcaaataaattacaatataaaacaatttcaagcagcaaacagaacatacattagaacccaatccagtt 48864889  T
Q  127 gcacatacataa 138  Q
     ||||| |||||    
T  48864888 acacatgcataa 48864877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 469 - 671
Target Start/End: Original strand, 45365784 - 45365986
Alignment:
Q  469 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 568  Q
    ||||||||||||||||||||||||||||||| | || || |||||||||   |   ||||| |||||| |||||  ||| | ||||| || ||||||||     
T  45365784 atctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagac 45365883  T
Q  569 gaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctccaaatacccacaaactac 668  Q
    ||| ||||||| || || |||||||||||||||||| || ||| |||| ||||||| ||||| | |||||||| || |||||||||||||||||||| ||    
T  45365884 gaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccac 45365983  T
Q  669 aat 671  Q
    |||    
T  45365984 aat 45365986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 45371131 - 45371326
Alignment:
Q  31 ttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcac 130  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| | ||  || || ||||||||||||||| |||||||  | |||    
T  45371131 ttgatcttgatcaacatgcataaattcataaaataaattacattataaaacaatttctaacagtgatcacaacatacattagaactcaatccaactacac 45371230  T
Q  131 atacat-----------aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatatta 215  Q
    || |||           ||||||| ||||| |||||||||  ||||||| || |||||||||||||||| | ||||||||||||||||||||||||    
T  45371231 atgcataaataaaagtgaatcacacaaacagagttgtcaaagtttccaagaagcatattacaaacaattaatcaataaacatttcatgacatatta 45371326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 625 - 692
Target Start/End: Original strand, 48705102 - 48705169
Alignment:
Q  625 tatagcactaaaactgagaagttctccaaatacccacaaactacaataatcaagtgtatctcgaaact 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48705102 tatagcactaaaactgagaagttctccaaatacccacaaactacaataatcaagtgtatctcgaaact 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 538 - 667
Target Start/End: Complemental strand, 7790508 - 7790379
Alignment:
Q  538 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaa 637  Q
    |||||| ||| || |||||||||||||||| |||||||||||||| || ||||||||||||||||||  | ||| |||| |||||||  |||| |  |||    
T  7790508 aatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaa 7790409  T
Q  638 ctgagaagttctccaaatacccacaaacta 667  Q
    ||||||| ||||||||||||||||||||||    
T  7790408 ctgagaaattctccaaatacccacaaacta 7790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 432 - 604
Target Start/End: Original strand, 49038411 - 49038577
Alignment:
Q  432 gtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagt 531  Q
    ||||||||||||| ||||||||||||| | | | |  ||||||||||||||||| ||| ||||||||| |||| |  |||||||||      | |||| |    
T  49038411 gtcctttgtcatcatacttcatcaatcgattataaccatctgttccaataatatgaccactttttgtacaacatataggggaaaag------tagggaat 49038504  T
Q  532 gccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||| ||||||||||| || |||| ||||||||||| ||||| |||||||| || ||||||||||||||||||    
T  49038505 gccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttca 49038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 552 - 676
Target Start/End: Original strand, 48156076 - 48156200
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctcc 651  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||| |||| | |||| |  |||| | ||| |  |||||||||| ||||||    
T  48156076 gagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctcc 48156175  T
Q  652 aaatacccacaaactacaataatca 676  Q
    ||||||||||||| |||||| ||||    
T  48156176 aaatacccacaaattacaattatca 48156200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 552 - 667
Target Start/End: Complemental strand, 7771809 - 7771694
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctcc 651  Q
    ||||||||||||| || |||||||||||||| || ||||||||||||||| ||  | ||| |||| |||||||  |||| |  |||||||||| ||||||    
T  7771809 gagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattctcc 7771710  T
Q  652 aaatacccacaaacta 667  Q
    ||||||||||||||||    
T  7771709 aaatacccacaaacta 7771694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 430 - 665
Target Start/End: Complemental strand, 48871096 - 48870861
Alignment:
Q  430 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 529  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
T  48871096 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48870997  T
Q  530 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatag 629  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||  | |||||| |  |||||| ||||    
T  48870996 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatag 48870897  T
Q  630 cactaaaactgagaagttctccaaatacccacaaac 665  Q
    ||   | |||||||| ||| ||||||||||||||||    
T  48870896 catatagactgagaaattccccaaatacccacaaac 48870861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 430 - 665
Target Start/End: Complemental strand, 48876400 - 48876165
Alignment:
Q  430 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 529  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
T  48876400 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48876301  T
Q  530 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatag 629  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||  | |||||| |  |||||| ||||    
T  48876300 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatag 48876201  T
Q  630 cactaaaactgagaagttctccaaatacccacaaac 665  Q
    ||   | |||||||| ||| ||||||||||||||||    
T  48876200 catatagactgagaaattccccaaatacccacaaac 48876165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 48146910 - 48147066
Alignment:
Q  38 tgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcacatacat- 136  Q
    ||||||||||| | ||| |||| || |||||||||||||| |||||||||| |||  ||||| ||||||||||||||| |||||||||| ||||| |||     
T  48146910 tgatcaacatgtagaaactcataaaataaattacaatatagaacaatttcaggcagtgaccacaacatacattagaactcaatccagttacacatgcata 48147009  T
Q  137 ----------aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaa 183  Q
              ||||||  |||||||||||||||||||||||| ||||||| ||||||    
T  48147010 aataacactgaatcacgcaaacaaagttgtcaacatttccaagaaacatactacaaa 48147066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 48853537 - 48853459
Alignment:
Q  145 aaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagct 223  Q
    |||||||||||| |||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||| ||||    
T  48853537 aaacaaagttgtaaacatttccaattaacatatcacagataattgaccaacaaacatttcatgacatattacatcagct 48853459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 664
Target Start/End: Original strand, 48147235 - 48147472
Alignment:
Q  421 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 520  Q
    |||||| |||||||||||||| |  ||||||| |||| |||| |||  || |||||||||||| ||||| ||||||||  | || |  |||||||||       
T  48147235 ctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaag--- 48147331  T
Q  521 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccat 620  Q
       | |||| |||||| |||||||| |  | |||| ||||||||||| |||||||||||||| || |||||||||||||||||| ||||  ||||  |||    
T  48147332 ---tagggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcat 48147428  T
Q  621 aatctatagcactaaaactgagaagttctccaaatacccacaaa 664  Q
     ||| ||| |  | | |||||||| || ||||||||||||||||    
T  48147429 gatccatacccgttagactgagaaattgtccaaatacccacaaa 48147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 48734767 - 48734855
Alignment:
Q  294 aagagttcatagtacagtataaatatcaagaaaatgaatggtgaagaagaatattccacaacctcattctttcttcttaggcttgttca 382  Q
    ||||||||||| | || ||||||||||||||||||| |||||||| ||||| ||| |||||||||||   |||||||||||||||||||    
T  48734767 aagagttcataatgcaatataaatatcaagaaaatggatggtgaaaaagaacatttcacaacctcatatcttcttcttaggcttgttca 48734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 48734493 - 48734556
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaag 90  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||    
T  48734493 gattttgatcttgatcaacatgcataaattcatcaaataaattacggtataaaacaaattcaag 48734556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 197 - 364
Target Start/End: Complemental strand, 48864846 - 48864686
Alignment:
Q  197 aacatttcatgacatattacattagctcatgtgatagtactgattcatgctatacaaatgcatgcaaacacatagtactctacagatgcagccactgaag 296  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||    |||||||||||  |||||||| |||| ||||| |||||| ||   |||    
T  48864846 aacatttcactacatattacattagctcatgtggta-tactgactcat--attacaaatgcatttaaacacatggtaccctacaaatgcagtcatccaag 48864750  T
Q  297 agttcatagtacagtataaatatcaagaaaatgaatggtgaagaagaatattccacaacctcattctt 364  Q
    ||||||||  ||| |||||||||||||||    ||| |||||| |||||||| |||||||||||||||    
T  48864749 agttcataacacaatataaatatcaagaa----aatagtgaaggagaatatttcacaacctcattctt 48864686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 430 - 665
Target Start/End: Complemental strand, 48886782 - 48886547
Alignment:
Q  430 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 529  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| |  | |    
T  48886782 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaa 48886683  T
Q  530 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatag 629  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||  | |||||| |  |||||| ||||    
T  48886682 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatag 48886583  T
Q  630 cactaaaactgagaagttctccaaatacccacaaac 665  Q
    ||   | |||||||| ||| ||||||||||||||||    
T  48886582 catatagactgagaaattccccaaatacccacaaac 48886547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 48155562 - 48155730
Alignment:
Q  42 caacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcacatacat----- 136  Q
    ||||||||||||| |||  || ||||||| || ||||||||||||||||||| ||||| ||||||||||||||| |||||||||  |||||  ||         
T  48155562 caacatgcataaactca--aaataaattaaaaaataaaacaatttcaagcaatgaccacaacatacattagaactcaatccagtgacacatgtataaata 48155659  T
Q  137 ------aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacat 201  Q
          ||||||| |||||||| |||||||||  |||| ||||||| |||||| | |||||||||||||||    
T  48155660 tcagtgaatcacacaaacaaagctgtcaacatgcccaacaaacatactacaaatagttgaccaataaacat 48155730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 604
Target Start/End: Original strand, 45371638 - 45371773
Alignment:
Q  469 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 568  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||  |    | |||  |||||  ||||  ||| ||  ||| |||||||||||     
T  45371638 atctgttccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagac 45371737  T
Q  569 gaatgcactttgtactccttcatcacccatatttca 604  Q
    |||||||||||||| || ||||| ||||||||||||    
T  45371738 gaatgcactttgtattctttcataacccatatttca 45371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 48871606 - 48871500
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaa-ctaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagt 125  Q
    ||||||||||||| | |||||||| ||||| ||||| |||| |||| || |||||||||||||||||  ||||| ||||||||||||| | ||||||| |    
T  48871606 gattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaat 48871507  T
Q  126 tgcacat 132  Q
    | |||||    
T  48871506 tacacat 48871500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 48876910 - 48876804
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaa-ctaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagt 125  Q
    ||||||||||||| | |||||||| ||||| ||||| |||| |||| || |||||||||||||||||  ||||| ||||||||||||| | ||||||| |    
T  48876910 gattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaat 48876811  T
Q  126 tgcacat 132  Q
    | |||||    
T  48876810 tacacat 48876804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 621
Target Start/End: Complemental strand, 7878797 - 7878728
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccata 621  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||||||| || ||| |||| ||||    
T  7878797 gagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcata 7878728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 7908716 - 7908664
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  7908716 gagttttattccaagatgaatgcactttgtattctttcatcacccatatttca 7908664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 48160479 - 48160531
Alignment:
Q  34 atcttgatcaacatgcataaattcatcaactaaattacaatataaaacaattt 86  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  48160479 atcttgatcaacatgcataaactcatcaaattaattacaatataaaacaattt 48160531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 604
Target Start/End: Complemental strand, 48853226 - 48853043
Alignment:
Q  421 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 520  Q
    ||||||||  ||||||| | |||| ||||||| ||||||| | |||  ||| ||||||||||||||||| || |||||| |||| | ||||||||||       
T  48853226 ctctagcaaatgtccttcgccatcatacttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtag 48853127  T
Q  521 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |   ||||| ||  | ||| ||| ||| || |||| ||||||||||| ||| |||||||||| || ||||| ||||||||||||    
T  48853126 tgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttca 48853043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 671
Target Start/End: Original strand, 45384547 - 45384664
Alignment:
Q  560 gtccaagatgaatgcactttgtactccttcatcacccatatttcatctc------tattattaccataatctatagcactaaaactgagaagttctccaa 653  Q
    |||||||| ||||||||||| || || |||||||||||||||||| ||       || ||||| ||||||  ||||| | ||||||||||| ||||||||    
T  45384547 gtccaagacgaatgcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgcatagctcaaaaactgagaaattctccaa 45384646  T
Q  654 atacccacaaactacaat 671  Q
    |||||||||||| |||||    
T  45384647 atacccacaaaccacaat 45384664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 604
Target Start/End: Original strand, 49043681 - 49043867
Alignment:
Q  418 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 517  Q
    ||||||||| | ||||||||| ||||| ||||||| |||||||   |||  ||| |||||||||||||||||  |||||||| |||| | ||| |  |||    
T  49043681 atactctagaaactgtcctttttcatcatacttcaccaatccaacttcaccatcagttccaataatatcaccaatttttgtacaacatattggagcgaag 49043780  T
Q  518 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
       |   ||||| || ||| |||||| | | || |||| |||||||| || |||||||||||||| || ||||||||||||||||||    
T  49043781 taatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttca 49043867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 604
Target Start/End: Original strand, 49048068 - 49048254
Alignment:
Q  418 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 517  Q
    ||||||||| | ||||||||| ||||||||||||| |||||||   |||  ||| ||| ||||||||||||| |||||||||   || | ||| || |||    
T  49048068 atactctagaaactgtcctttttcatcgtacttcaccaatccaacttcaccatcagttgcaataatatcaccactttttgtacggcatattggagagaag 49048167  T
Q  518 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |  | | ||||| || ||| | |||| | | ||  ||| |||||||| || ||||||||||| ||||| ||||||||||||||||||    
T  49048168 caatgggtgggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttca 49048254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 665
Target Start/End: Original strand, 7773476 - 7773585
Alignment:
Q  556 tttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctccaaat 655  Q
    |||| ||||||| |||||||||||||| || |||||||||||||||||| || ||| |||| ||| |||  |||| |  | ||| |||  ||||||||||    
T  7773476 tttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaat 7773575  T
Q  656 acccacaaac 665  Q
    ||||||||||    
T  7773576 acccacaaac 7773585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 47208870 - 47208773
Alignment:
Q  34 atcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcaca 131  Q
    ||||||||||||  ||||||||||||||| |||||| ||||||| |||||||||||  |  ||||| || |||||| || || |||||||||| ||||    
T  47208870 atcttgatcaacgcgcataaattcatcaaataaatttcaatatagaacaatttcaactagtgaccacaatatacatcagcactcaatccagttacaca 47208773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 48170187 - 48170334
Alignment:
Q  65 aaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcacatacataa-----------tcacaaaaacaaagt 153  Q
    |||||||||||||| |||||||| ||||  ||||| |||||||||||| || |||||||||| ||||| |||||           ||||| ||||||||     
T  48170187 aaattacaatataatacaatttctagcagtgaccacaacatacattagcactcaatccagttacacatgcataaataacagtgaatcacacaaacaaagc 48170286  T
Q  154 tgtcaacatttccaataaacatattacaaacaattgaccaataaacat 201  Q
    | ||||| |||| || ||||||| |||||| | |||||||||||||||    
T  48170287 tatcaacctttcaaacaaacatactacaaatagttgaccaataaacat 48170334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 7772965 - 7773029
Alignment:
Q  145 aaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgac 209  Q
    ||||||||||||||| ||||||||||| | ||| ||||| |||| ||||||||||||| ||||||    
T  7772965 aaacaaagttgtcaatatttccaataagcctatgacaaataattaaccaataaacattccatgac 7773029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 48899618 - 48899526
Alignment:
Q  139 tcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgac-caataaacatttcatgacatattacattagctcatgtga 230  Q
    ||||| |||||||| |||||| ||||||||||| |||||| ||||  | |||  |||||||||||||||||||||||  || |||||||||||    
T  48899618 tcacacaaacaaagctgtcaatatttccaataagcatattgcaaaatagtgaaacaataaacatttcatgacatattggatcagctcatgtga 48899526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 50666729 - 50666677
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||| ||||    
T  50666729 gagttttagtccaagatgaatgcactttgtattcttacatcacccataattca 50666677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 604
Target Start/End: Complemental strand, 48864444 - 48864397
Alignment:
Q  557 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||    
T  48864444 ttagtccaagacgaatgcactttgtattctttcatcacccatatttca 48864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 662
Target Start/End: Original strand, 7237390 - 7237500
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctcc 651  Q
    |||||||||||||| | ||||||| |||||| || ||||||||||||||| ||  | ||| |||| |||||||   ||| |  | |||||||| ||||||    
T  7237390 gagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctcc 7237489  T
Q  652 aaatacccaca 662  Q
    |||||||||||    
T  7237490 aaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 48887292 - 48887186
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaa-ctaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagt 125  Q
    ||||||||||||| | |||||||  ||||||||||| |||| |||| ||  ||||||||||||||||  ||||| ||||| ||||||| | ||||||| |    
T  48887292 gattttgatcttgtttaacatgctaaaattcatcaaactaatttaccatgaaaaacaatttcaagcagtgaccaaaacatgcattagagctcaatccaat 48887193  T
Q  126 tgcacat 132  Q
    | |||||    
T  48887192 tacacat 48887186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 604
Target Start/End: Complemental strand, 48903383 - 48903317
Alignment:
Q  538 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||||||||| ||  | |||||||||||||  ||||||||||||| || ||||||||||||||||||    
T  48903383 aatagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttca 48903317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 49040378 - 49040455
Alignment:
Q  136 taatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatat 213  Q
    |||||||| ||||||||||||||| ||| ||||||| ||||||||| | | || ||||||| ||||||  ||||||||    
T  49040378 taatcacacaaacaaagttgtcaatattaccaataagcatattacagatagttaaccaatatacattttgtgacatat 49040455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 670
Target Start/End: Complemental strand, 50672907 - 50672794
Alignment:
Q  557 ttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctccaaata 656  Q
    |||||||| || ||||||| |||||| |  ||||||||||||||||||  | ||| | |||| |  |  ||||| | ||||||||||| |||||||||||    
T  50672907 ttagtccacgacgaatgcaatttgtattgtttcatcacccatatttcagttttataactaccctcttgcatagcccaaaaactgagaaattctccaaata 50672808  T
Q  657 cccacaaactacaa 670  Q
    |||||||| |||||    
T  50672807 cccacaaattacaa 50672794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 7801051 - 7800999
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
T  7801051 gagttttattccaagacgaatgcactttgtaatctttcaacacccatatttca 7800999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 7813891 - 7813839
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
T  7813891 gagttttattccaagacgaatgcactttgtattctttcaacacccatatttca 7813839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 43595969 - 43596045
Alignment:
Q  44 acatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaat 120  Q
    ||||||||||| || | || |||||||||| ||||||||||||| ||||  ||||| ||||||||||| ||| ||||    
T  43595969 acatgcataaactcgtaaaataaattacaaaataaaacaatttcgagcattgaccacaacatacattaaaactcaat 43596045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 48871468 - 48871388
Alignment:
Q  149 aaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtg 229  Q
    |||||||||||||||| |||||||||||||| ||| |  | | ||||||||| ||||| |||||||| || ||| ||||||    
T  48871468 aaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataagcacatgtg 48871388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 48876772 - 48876692
Alignment:
Q  149 aaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtg 229  Q
    |||||||||||||||| |||||||||||||| ||| |  | | ||||||||| ||||| |||||||| || ||| ||||||    
T  48876772 aaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataagcacatgtg 48876692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 49043363 - 49043427
Alignment:
Q  28 attttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagca 92  Q
    ||||||||||| |  |||||||||||| ||||||| ||||||||||| || ||||||| ||||||    
T  49043363 attttgatctttagtaacatgcataaactcatcaaataaattacaatttataacaattacaagca 49043427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 45365269 - 45365343
Alignment:
Q  137 aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacat 211  Q
    ||||||| |||||||| | ||||  |||||||||| |||||||||||   || ||||||||||||| ||||||||    
T  45365269 aatcacacaaacaaagatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacat 45365343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 499
Target Start/End: Original strand, 45384454 - 45384484
Alignment:
Q  469 atctgttccaataatatcaccgctttttgta 499  Q
    |||||||||||||||||||||||||||||||    
T  45384454 atctgttccaataatatcaccgctttttgta 45384484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 48887154 - 48887076
Alignment:
Q  149 aaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatg 227  Q
    |||||||||||||||| |||||||||||| | |||||  | | |||| |||| ||||| |||||||| || ||||||||    
T  48887154 aaagttgtcaacattttcaataaacatataataaacagctaagcaattaacagttcataacatattaaataagctcatg 48887076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 49106107 - 49106173
Alignment:
Q  249 tacaaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcatagtacagtataa 315  Q
    ||||||| ||| |||||||||| || |||||| ||||| ||||| ||||||||||| |||| |||||    
T  49106107 tacaaatccattcaaacacatactaatctacaaatgcaaccactcaagagttcataatacaatataa 49106173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 7787540 - 7787475
Alignment:
Q  147 acaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacata 212  Q
    ||||||||||||| |||| | |||| ||||| ||||||| |  || ||||||||||||||||||||    
T  7787540 acaaagttgtcaatattttcgataagcatatgacaaacagtaaacgaataaacatttcatgacata 7787475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 48889538 - 48889457
Alignment:
Q  145 aaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcat 226  Q
    |||||||| |||||| |||| |||| |||| | |||||| | || || | |||| ||||||||||||||||||| |||||||    
T  48889538 aaacaaagctgtcaatattttcaattaacaaactacaaagagttaacaactaaatatttcatgacatattacatcagctcat 48889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 7786878 - 7786826
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||| ||| |||||||| ||||||| ||||| || ||||||||||||||||||    
T  7786878 gagtcttattccaagataaatgcacgttgtattctttcatcacccatatttca 7786826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 37826188 - 37826248
Alignment:
Q  154 tgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatatt 214  Q
    |||||| ||||  ||||| |||||| |||||| || ||||||||||||||||||| |||||    
T  37826188 tgtcaatatttgtaataagcatattccaaacagttaaccaataaacatttcatgaaatatt 37826248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 45384080 - 45384171
Alignment:
Q  137 aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtg 229  Q
    ||||||| ||||| ||||||||| ||||| ||||| |||||||||||   || ||||||| ||||| |||||||| ||  || ||||||||||    
T  45384080 aatcacacaaacagagttgtcaatatttc-aataagcatattacaaattgttaaccaatagacattgcatgacatgttcgatcagctcatgtg 45384171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 47208287 - 47208239
Alignment:
Q  556 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    ||||||||||||||| || |||||||| || |||||||||| |||||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttca 47208239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 47208750 - 47208710
Alignment:
Q  143 aaaaacaaagttgtcaacatttccaataaacatattacaaa 183  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  47208750 aaaaaccaagttgtcaacatttccaacaaacatactacaaa 47208710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 437 - 517
Target Start/End: Complemental strand, 48899269 - 48899189
Alignment:
Q  437 ttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 517  Q
    |||||||| ||||||| |||||||   |||  |||||||||||||||||  || ||||||||| | ||||||||| |||||    
T  48899269 ttgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaag 48899189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 49058046 - 49058097
Alignment:
Q  166 caataaacatattacaaacaattgaccaataaacatttcatgacatattacat 218  Q
    |||||||||||||||||    |||||||||||||| |||||||||||||||||    
T  49058046 caataaacatattacaagtgtttgaccaataaaca-ttcatgacatattacat 49058097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 29697261 - 29697149
Alignment:
Q  12 atgaaatgagaatgggattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccaga-acatacatt 110  Q
    |||||||||||||| ||||||||| |||||||||||||||||  |||| || | |||||||||||||| ||||||||| ||||||||| | |||||||||    
T  29697261 atgaaatgagaatgagattttgatattgatcaacatgcataagatcataaaatcaattacaatataaaccaatttcaaccaacgaccacagacatacatt 29697162  T
Q  111 agaacccaatcca 123  Q
    ||||  |||||||    
T  29697161 agaatacaatcca 29697149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29711578 - 29711651
Alignment:
Q  12 atgaaatgagaatgggattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatt 85  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| | ||||||||||||||    
T  29711578 atgaaatgagaatgggattttgatcttgatcaacatgcataaactcatcaaatcaatgaaaatataaaacaatt 29711651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 662
Target Start/End: Complemental strand, 9120191 - 9120067
Alignment:
Q  538 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaa 637  Q
    |||||||| | || |||||||  ||||||| |||||||||||||| || |||||||||||||||||| || ||| |||| || |||| ||||| |  | |    
T  9120191 aatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatata 9120092  T
Q  638 ctgagaagttctccaaatacccaca 662  Q
    ||||||| |||||||||||||||||    
T  9120091 ctgagaaattctccaaatacccaca 9120067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 29689145 - 29688921
Alignment:
Q  12 atgaaatgagaatgggattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaa-catacatt 110  Q
    ||||||| |||||| ||||||||| ||||||||||| |||||  |||| || | |||||||||||||| |||||||||  || ||||| || ||| ||||    
T  29689145 atgaaataagaatgagattttgatattgatcaacattcataagatcataaaatcaattacaatataaaccaatttcaaataatgaccacaaacatgcatt 29689046  T
Q  111 agaacccaatccagttgcacatacata---------atcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacat 201  Q
    ||||| |||||||  | |||  ||| |         |||| | ||||||||  |||||||||| ||||||||| | ||||||   |||||||||||||||    
T  29689045 agaacgcaatccatatacacgcacaaacaacattgcatcatagaaacaaagcagtcaacattttcaataaacacaatacaaatgtttgaccaataaacat 29688946  T
Q  202 ttcatgacatattacattagctcat 226  Q
    ||||||||||||| ||| |||||||    
T  29688945 ttcatgacatatttcatcagctcat 29688921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 562 - 660
Target Start/End: Complemental strand, 179462 - 179364
Alignment:
Q  562 ccaagatgaatgcactttgtactccttcatcacccatatttcatctctattattaccataatctatagcactaaaactgagaagttctccaaataccca 660  Q
    ||||||||||||||||||||| || |||||||||||||||||| || ||| |||| ||||||| ||||| |  | |||||||| || ||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 42561985 - 42562028
Alignment:
Q  557 ttagtccaagatgaatgcactttgtactccttcatcacccatat 600  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  42561985 ttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 9120739 - 9120673
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatca-actaaattacaatataaaacaatttcaagca 92  Q
    |||||||||||||||  ||||||||||| |||| | ||||| |||| | ||||||||||||||||||    
T  9120739 gattttgatcttgattgacatgcataaactcatgagactaatttaccaaataaaacaatttcaagca 9120673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 29697001 - 29696896
Alignment:
Q  261 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaatgaa--tggtgaagaagaatattccacaacctc 358  Q
    |||||| ||| ||| ||||| ||||||| ||| |||||| |||| |||| ||||| ||| ||||  |||||  ||||||||||||||| | || ||||||    
T  29697001 caaacatatattaccctacaaatgcagctactcaagagtccataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctc 29696902  T
Q  359 attctt 364  Q
    ||||||    
T  29696901 attctt 29696896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 408 - 517
Target Start/End: Original strand, 4030291 - 4030400
Alignment:
Q  408 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaa 507  Q
    ||||| |||||| |||||||| ||||||||||||||| ||||||| |||| ||||  ||  || |||||||||||||||||| ||| ||||| | ||||     
T  4030291 aatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacat 4030390  T
Q  508 tggggaaaag 517  Q
    ||||||||||    
T  4030391 tggggaaaag 4030400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 328
Target Start/End: Original strand, 4029986 - 4030160
Alignment:
Q  158 aacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtgatagtactgattcatgctatacaaatgc 257  Q
    ||||||| ||||||||||||| ||||  ||| | |||||| |||||||||| |||||| ||||||| |||||  | ||||||||   ||  |||||||||    
T  4029986 aacattttcaataaacatattccaaatgattaatcaataaccatttcatgaaatattaaattagctaatgtggca-tactgatt--ggcattacaaatgc 4030082  T
Q  258 a-------tgcaaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaat 328  Q
    |       | |||||||||||||| ||||| ||||| || |  ||||||||||| |||| ||||| ||||||||||||    
T  4030083 attcaaagttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaat 4030160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 47451411 - 47451494
Alignment:
Q  416 cgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgta 499  Q
    |||| ||||| || ||||||||||||||  ||||| | |||||| || |||| ||||||||||||||||||||| |||||||||    
T  47451411 cgatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgta 47451494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 11024150 - 11024202
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||| ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  11024150 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttca 11024202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 604
Target Start/End: Original strand, 11005580 - 11005627
Alignment:
Q  557 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  11005580 ttagtccaagacgaatgcactttgtattctttcataacccatatttca 11005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 11004994 - 11005034
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaactaaa 67  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  11004994 gattttgatcttgatcaacatgcaaaaactcatcaaataaa 11005034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 11015138 - 11015190
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    ||||||||  |||||| |||||||||||||| || ||||| ||||||||||||    
T  11015138 gagttttaacccaagacgaatgcactttgtattctttcataacccatatttca 11015190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 24381927 - 24381868
Alignment:
Q  152 gttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacat 211  Q
    |||||||| ||||||||||||||| ||||||| | || ||||||||||||||||||||||    
T  24381927 gttgtcaatatttccaataaacatgttacaaatagttaaccaataaacatttcatgacat 24381868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 611
Target Start/End: Complemental strand, 24416192 - 24416133
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctat 611  Q
    ||||||||||||||||||| ||| ||||||| || |||||||||||||| ||| ||||||    
T  24416192 gagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctat 24416133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 24368064 - 24368006
Alignment:
Q  32 tgatcttgatcaacatgcataaattcatc-aactaaattacaatataaaacaatttcaa 89  Q
    ||||||||||||||||| ||||| ||||| |||||| |||| |||||||||||||||||    
T  24368064 tgatcttgatcaacatggataaactcatcaaactaatttaccatataaaacaatttcaa 24368006  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 24341262 - 24341224
Alignment:
Q  145 aaacaaagttgtcaacatttccaataaacatattacaaa 183  Q
    |||||||||||| || |||||||||||||||||||||||    
T  24341262 aaacaaagttgttaatatttccaataaacatattacaaa 24341224  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 24353627 - 24353589
Alignment:
Q  145 aaacaaagttgtcaacatttccaataaacatattacaaa 183  Q
    |||||||||||| || |||||||||||||||||||||||    
T  24353627 aaacaaagttgttaatatttccaataaacatattacaaa 24353589  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 24323184 - 24323139
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcaccca 597  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||||    
T  24323184 gagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 24310630 - 24310582
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 600  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  24310630 gagttttactccaagaagactgcactttgtattctttcatcacccatat 24310582  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 24367579 - 24367531
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 600  Q
    |||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  24367579 gagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 14197230 - 14197288
Alignment:
Q  34 atcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagca 92  Q
    |||||||| |||||||||||| ||||||| | ||||||||||||||||||||| |||||    
T  14197230 atcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattttaagca 14197288  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 21017354 - 21017301
Alignment:
Q  27 gattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaa 80  Q
    |||||||||||| |  |||||||||||| ||||||| |||||||||||||||||    
T  21017354 gattttgatctttagtaacatgcataaactcatcaaataaattacaatataaaa 21017301  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 559 - 599
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  559 agtccaagatgaatgcactttgtactccttcatcacccata 599  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 21016235 - 21016183
Alignment:
Q  552 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 604  Q
    |||| ||||||||||| ||||| |||||||| || ||||| ||||||||||||    
T  21016235 gagtcttagtccaagacgaatgtactttgtattctttcataacccatatttca 21016183  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 29351178 - 29351111
Alignment:
Q  261 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaat 328  Q
    |||||||||||||| ||||| ||||| ||||  ||||||||||| |||| ||||| ||||||||||||    
T  29351178 caaacacatagtaccctacaaatgcaaccacccaagagttcataatacaatataattatcaagaaaat 29351111  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 489
Target Start/End: Complemental strand, 29350980 - 29350899
Alignment:
Q  408 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcacc 489  Q
    ||||| |||||| |||||||| ||||||||||||||  ||||||| |||| ||||  ||  ||| |||||||||||||||||    
T  29350980 aatagcagcgatgctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacc 29350899  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 29351251 - 29351214
Alignment:
Q  192 caataaacatttcatgacatattacattagctcatgtg 229  Q
    |||||| |||||||||||||||||||||||||||||||    
T  29351251 caataatcatttcatgacatattacattagctcatgtg 29351214  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 48884720 - 48884652
Alignment:
Q  146 aacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatatt 214  Q
    ||||||| |||||| ||||||||||| || |||| ||| |||| |||| ||||||||||||| ||||||    
T  48884720 aacaaagctgtcaatatttccaataaccaaattaaaaataattaaccactaaacatttcatgtcatatt 48884652  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 48884615 - 48884563
Alignment:
Q  252 aaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcata 304  Q
    |||||||  |||||||||| ||||||||| ||||||||||  |||||||||||    
T  48884615 aaatgcagtcaaacacatattactctacaaatgcagccaccaaagagttcata 48884563  T

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