View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_10 (Length: 414)
Name: NF17133_low_10
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_10 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 33983874 - 33984292
Alignment:
| Q |
16 |
tttatgtcatggcttttaactgttaagttcaagtttggggttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33983874 |
tttatgtcatggcttttaactgttaagttcaagtttggggttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttg |
33983973 |
T |
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| Q |
116 |
tttttatcatgaccaaatgtcctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33983974 |
tttttatcatgaccaaatgtcctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagt |
33984073 |
T |
|
| Q |
216 |
tatgttatggtaagagtttgagcaatttttgtaatcaattttggttactatttctcataaagtatgtgatatgaatataattacatatgttgccctatag |
315 |
Q |
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| T |
33984074 |
tatgttatggtaagagtttgagcaatttttgtaatcaattttggttactatttctcataaagtatgtgatatgaatataattacatatgttgccctatag |
33984173 |
T |
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| Q |
316 |
--------------------atagtgtagttgtatctattagttttatattgcatgatgaaaggccaaaaatattgttgcaataaaagagacattaggac |
395 |
Q |
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| T |
33984174 |
tgtagttttttttactaactatagtgtagttgtatctattagttttatattgcatgatgaaaggccaaaaatattgttgcaataaaagagacattaggac |
33984273 |
T |
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| Q |
396 |
taacataaatctatggttc |
414 |
Q |
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| T |
33984274 |
taacataaatttatggttc |
33984292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 33993547 - 33993788
Alignment:
| Q |
16 |
tttatgtcatggcttttaactgttaagttcaagtttggggttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttg |
115 |
Q |
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||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993547 |
tttatgtcatggcttttaactgtgaggttcaagtttggccttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttg |
33993646 |
T |
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| Q |
116 |
tttttatcatgaccaaatgtcctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagt |
215 |
Q |
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| T |
33993647 |
tttttatcatgaccaaatgtcctgatacatggaagggtttttcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagc |
33993746 |
T |
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| Q |
216 |
tatgttatggtaagagtttgagcaatttttgtaatcaatttt |
257 |
Q |
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| T |
33993747 |
tatgttatggtaagaatttcagtaattttcataatcaatttt |
33993788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 34015438 - 34015501
Alignment:
| Q |
137 |
ctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttc |
200 |
Q |
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| T |
34015438 |
ctgatacttggaaaggtttctcatttttagctttccaagatctttggcctgttgtcaagctttc |
34015501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 34005579 - 34005646
Alignment:
| Q |
133 |
tgtcctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttc |
200 |
Q |
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| T |
34005579 |
tgtcctgaaacttggaatggtttctcatttttagcattcaaagacctttggcctgttgtcaaactttc |
34005646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 9237496 - 9237382
Alignment:
| Q |
116 |
tttttatcatgaccaaatgtcctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagt |
215 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||| | ||||| ||| | || |||||||| |
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| T |
9237496 |
ttttcatcatgaaaaaatgtcctgatacttggaagggtttctcaatattggctttcaaagatctttggcctgttgtaaagctctctgtctcatctggagt |
9237397 |
T |
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| Q |
216 |
tatgttatggtaaga |
230 |
Q |
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| T |
9237396 |
catgttgtggtaaga |
9237382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 9217988 - 9217874
Alignment:
| Q |
116 |
tttttatcatgaccaaatgtcctgatacatggaagggtttctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagt |
215 |
Q |
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|||| ||||||| ||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||| ||| | |||| ||||| || |||||| | |
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| T |
9217988 |
ttttcatcatgaaaaaatgtcctgaaacttggaagggtttctcaattttggctttcaaagatctttggccagttgtgaagcaatctttctcatctggaat |
9217889 |
T |
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| Q |
216 |
tatgttatggtaaga |
230 |
Q |
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||||| |||||||| |
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| T |
9217888 |
catgttgtggtaaga |
9217874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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