View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17133_low_19 (Length: 286)
Name: NF17133_low_19
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 14705445 - 14705178
Alignment:
| Q |
1 |
aaaataccaactacccaaataattaactcataatcccaattcgacaagattattattgtacctaagaaaattgatcttaaccaggaaccacttattaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14705445 |
aaaataccaactacccaaataattaactcataatcccaattcgacaagattattattgtacctaagaaaattgatcttaaccaagaaccacttattaggt |
14705346 |
T |
|
| Q |
101 |
gcaaagctcacgagcaataccaattcttgagttgggtacatcaaatagcacacggtggttttgttgttgcatgttggctatcacgttcaacaccgagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14705345 |
gcaaagctcacgagcaataccaattcttgagttgggtacatcaaatagcacacggtggttttgttgttgcatgttggctatcacgttcaacaccgagttc |
14705246 |
T |
|
| Q |
201 |
acgttatcgggtgccccggccatggccaagcatgtggtgctaccggcggtgctgtgtatgacaatgtt |
268 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
14705245 |
acgttatcgggtgctcctgccatggccaaacatgttgtgctaccggcggtgctgtgtatgacgatgtt |
14705178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 92 - 259
Target Start/End: Original strand, 4035531 - 4035698
Alignment:
| Q |
92 |
ttattaggtgcaaagctcacgagcaataccaattcttgagttgggtacatcaaatagcacacggtggttttgttgttgcatgttggctatcacgttcaac |
191 |
Q |
| |
|
|||||| || || ||||||||||||| ||||| || ||||| || |||||| | |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4035531 |
ttattaagtacatagctcacgagcaacaccaaccctagagttagggacatcatagagcacacggtggttttgttgctgcatgttggctatcacgttcaac |
4035630 |
T |
|
| Q |
192 |
accgagttcacgttatcgggtgccccggccatggccaagcatgtggtgctaccggcggtgctgtgtat |
259 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| || |||||||| || |||||||| ||||| |
|
|
| T |
4035631 |
accgagttcacattatcgggtgcgcccgccatggccaaacacgtggtgctgcctgcggtgctatgtat |
4035698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 13952172 - 13952005
Alignment:
| Q |
92 |
ttattaggtgcaaagctcacgagcaataccaattcttgagttgggtacatcaaatagcacacggtggttttgttgttgcatgttggctatcacgttcaac |
191 |
Q |
| |
|
|||||| || || ||||||||||||| ||||| || ||||| || |||||| | || ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13952172 |
ttattaagtacatagctcacgagcaacaccaaccctagagttagggacatcatagagaacacggtggttttgttgctgcatgttggctatcacgttcaac |
13952073 |
T |
|
| Q |
192 |
accgagttcacgttatcgggtgccccggccatggccaagcatgtggtgctaccggcggtgctgtgtat |
259 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| || |||||||| || |||||||| ||||| |
|
|
| T |
13952072 |
accgagttcacattatcgggtgcgcccgccatggccaaacacgtggtgctgcctgcggtgctatgtat |
13952005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University