View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_2 (Length: 600)
Name: NF17133_low_2
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 590
Target Start/End: Original strand, 7749943 - 7750514
Alignment:
| Q |
19 |
caaacatcctccaaaaaacatccttattttgtaacacaaagtcaattgttggcactgcaggtccaacccttgtaacacccaaatcctgtaagttaaaaca |
118 |
Q |
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| T |
7749943 |
caaacatcctccaaaaaacatccttattttgtaacacaaagtcaattgttggcactgcaggtccaacccttgtaacacccaaattctgtaagttaaaaca |
7750042 |
T |
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| Q |
119 |
tagcttaaaaggcttcactggcttaacttttggaacatcttcaaattcttttgcaaatgcatcaacaaaatcattatatatagatgtttccatgattgtg |
218 |
Q |
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| T |
7750043 |
tagcttgaaaggcttcactggcttaacttttggaacatcttcaagttcttttgcaaatgcatcaacaaaatcattatatatagatgtttccatgattgtg |
7750142 |
T |
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| Q |
219 |
taaggatttaatgtgctaacttttgttccaccctcgccctcatcaccaatggacaacaatgatgtgtttaatgaaatctgtttttcattgcttctaatag |
318 |
Q |
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| T |
7750143 |
taaggatttaatgtgctaacttttgttccaccctcgccctcatcaccaatggacaacaatgatgtgtttaatgaaatctgtttttcatcgattctaatag |
7750242 |
T |
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| Q |
319 |
tcttcactccaatgaaattttcagttgcaggtcttccatggaaaattggcccggccgagttatcaggattttcgatcagtggtgtaaacataagaaattt |
418 |
Q |
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| T |
7750243 |
atttcactccaatgaaatattcagctgcaggtcttccatggaaaattggcccggccgagttatcaggattttcgatcagtggtgtaaacataagaaattt |
7750342 |
T |
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| Q |
419 |
ggaaacatcaatcccgggaaggaaaacataagggccatcaccaaagaacaaaacaccactagatgtttttgaagaactcaaacatattgcaaactttgtt |
518 |
Q |
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| T |
7750343 |
ggaaacatcaatcccgggaaggaaaacataagggccatcaccaaagaacaaaacaccactagatgtttttgaagaactcaaacatattgcaaactttgtt |
7750442 |
T |
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| Q |
519 |
ttgaagttgaaagcagaagcaaaaagtgaaggtaatgaaatattactctttccaaaacctaccatgcctttg |
590 |
Q |
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| T |
7750443 |
ttgaagttgaaagcagaagcaaaaagtgaaggtaatgaaatattactctttccaaaacctgccatgcctttg |
7750514 |
T |
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