View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_low_20 (Length: 284)

Name: NF17133_low_20
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17133_low_20
NF17133_low_20
[»] chr3 (23 HSPs)
chr3 (16-284)||(41359529-41359797)
chr3 (104-282)||(3135308-3135484)
chr3 (157-284)||(37990882-37991009)
chr3 (104-284)||(33803106-33803284)
chr3 (158-284)||(54018104-54018230)
chr3 (147-284)||(22303850-22303987)
chr3 (215-284)||(54017780-54017848)
chr3 (197-281)||(52634804-52634887)
chr3 (179-282)||(22304321-22304426)
chr3 (179-284)||(15772980-15773085)
chr3 (228-280)||(35946652-35946704)
chr3 (158-284)||(53577490-53577616)
chr3 (205-278)||(25739376-25739451)
chr3 (157-283)||(9239940-9240065)
chr3 (20-52)||(47964957-47964989)
chr3 (182-237)||(3135033-3135088)
chr3 (157-231)||(32462805-32462879)
chr3 (251-283)||(1634314-1634346)
chr3 (16-52)||(4823739-4823775)
chr3 (64-103)||(32462742-32462782)
chr3 (20-52)||(42342132-42342164)
chr3 (20-52)||(47964560-47964592)
chr3 (179-238)||(53577655-53577715)
[»] chr1 (22 HSPs)
chr1 (105-284)||(37555855-37556032)
chr1 (104-284)||(34649564-34649743)
chr1 (104-284)||(41157117-41157298)
chr1 (157-282)||(34364635-34364760)
chr1 (171-282)||(41184325-41184438)
chr1 (180-282)||(44290751-44290854)
chr1 (183-284)||(31767093-31767193)
chr1 (147-281)||(50051921-50052053)
chr1 (228-282)||(44290435-44290488)
chr1 (175-282)||(22077418-22077525)
chr1 (175-282)||(22077752-22077859)
chr1 (175-282)||(66395-66502)
chr1 (197-282)||(9956037-9956122)
chr1 (227-284)||(21378035-21378091)
chr1 (252-284)||(4266798-4266830)
chr1 (214-282)||(17294706-17294773)
chr1 (237-284)||(41142499-41142545)
chr1 (253-284)||(41157501-41157532)
chr1 (20-50)||(10351246-10351276)
chr1 (20-52)||(22077537-22077569)
chr1 (226-284)||(45493949-45494006)
chr1 (180-282)||(48588414-48588518)
[»] chr4 (32 HSPs)
chr4 (104-284)||(43174267-43174448)
chr4 (147-284)||(23817573-23817711)
chr4 (158-284)||(54108663-54108787)
chr4 (104-284)||(39404144-39404326)
chr4 (106-282)||(22028221-22028397)
chr4 (104-282)||(20825964-20826142)
chr4 (179-284)||(41370483-41370588)
chr4 (103-284)||(2740824-2740995)
chr4 (146-282)||(3340935-3341070)
chr4 (157-280)||(16889440-16889562)
chr4 (175-282)||(50002554-50002661)
chr4 (146-280)||(31691284-31691416)
chr4 (158-282)||(49076736-49076859)
chr4 (205-284)||(25483462-25483540)
chr4 (173-283)||(45489634-45489743)
chr4 (159-228)||(50627679-50627748)
chr4 (228-284)||(3271915-3271971)
chr4 (157-282)||(45496678-45496803)
chr4 (226-284)||(54936321-54936378)
chr4 (157-282)||(44621130-44621252)
chr4 (176-282)||(44620787-44620892)
chr4 (147-283)||(10246046-10246182)
chr4 (228-284)||(18879932-18879987)
chr4 (228-284)||(36608636-36608691)
chr4 (20-51)||(6975496-6975527)
chr4 (215-282)||(19895424-19895489)
chr4 (226-284)||(23817429-23817485)
chr4 (212-282)||(36572147-36572215)
chr4 (20-70)||(4955357-4955407)
chr4 (200-237)||(6876048-6876085)
chr4 (16-52)||(18879890-18879926)
chr4 (228-284)||(54342984-54343038)
[»] chr6 (30 HSPs)
chr6 (64-282)||(16107806-16108038)
chr6 (104-284)||(2578687-2578867)
chr6 (145-282)||(16454703-16454840)
chr6 (104-232)||(2579344-2579473)
chr6 (159-284)||(2579017-2579141)
chr6 (198-284)||(2377880-2377966)
chr6 (158-282)||(2579779-2579902)
chr6 (179-282)||(35210332-35210434)
chr6 (147-282)||(29518631-29518765)
chr6 (147-284)||(10074259-10074395)
chr6 (228-282)||(16108179-16108233)
chr6 (180-254)||(26544204-26544279)
chr6 (20-70)||(1127426-1127476)
chr6 (179-244)||(3409452-3409518)
chr6 (156-237)||(10073895-10073977)
chr6 (227-276)||(35210554-35210602)
chr6 (228-284)||(2378252-2378307)
chr6 (227-282)||(1846876-1846929)
chr6 (16-59)||(2578481-2578524)
chr6 (237-284)||(14748328-14748374)
chr6 (175-284)||(12071614-12071723)
chr6 (20-70)||(12071733-12071783)
chr6 (16-53)||(2578873-2578910)
chr6 (251-284)||(2843681-2843714)
chr6 (241-282)||(16455035-16455075)
chr6 (20-52)||(6071216-6071248)
chr6 (20-52)||(8482010-8482042)
chr6 (20-52)||(12085076-12085108)
chr6 (20-52)||(16454659-16454691)
chr6 (20-52)||(16454991-16455023)
[»] chr8 (28 HSPs)
chr8 (104-278)||(147583-147756)
chr8 (158-284)||(3037874-3038001)
chr8 (105-282)||(9483042-9483217)
chr8 (104-231)||(9482878-9483005)
chr8 (179-284)||(9309107-9309212)
chr8 (179-282)||(1014171-1014275)
chr8 (171-284)||(3038208-3038322)
chr8 (104-284)||(8918999-8919176)
chr8 (147-282)||(3669815-3669948)
chr8 (172-284)||(34835002-34835112)
chr8 (185-284)||(40518197-40518296)
chr8 (171-282)||(18371913-18372024)
chr8 (226-284)||(9309480-9309537)
chr8 (157-282)||(37544397-37544520)
chr8 (174-270)||(18372206-18372302)
chr8 (157-284)||(45122750-45122881)
chr8 (172-281)||(30359400-30359508)
chr8 (226-284)||(6876837-6876894)
chr8 (157-230)||(9608932-9609006)
chr8 (20-70)||(30359675-30359725)
chr8 (185-254)||(40518356-40518424)
chr8 (20-70)||(9507848-9507898)
chr8 (228-282)||(43274612-43274665)
chr8 (221-274)||(3038020-3038074)
chr8 (16-52)||(45121948-45121984)
chr8 (22-59)||(32305554-32305591)
chr8 (20-52)||(33113409-33113441)
chr8 (20-52)||(40518155-40518187)
[»] scaffold0391 (3 HSPs)
scaffold0391 (159-284)||(1591-1715)
scaffold0391 (104-227)||(1342-1465)
scaffold0391 (227-284)||(1082-1138)
[»] chr5 (27 HSPs)
chr5 (157-284)||(25328061-25328189)
chr5 (104-282)||(623946-624121)
chr5 (104-246)||(13415995-13416136)
chr5 (157-284)||(26075064-26075193)
chr5 (178-282)||(299617-299722)
chr5 (104-237)||(35150515-35150651)
chr5 (179-276)||(9498583-9498679)
chr5 (198-284)||(32487519-32487605)
chr5 (162-237)||(24489489-24489565)
chr5 (163-282)||(6224324-6224442)
chr5 (216-282)||(6500578-6500644)
chr5 (157-282)||(38427347-38427473)
chr5 (228-282)||(42405574-42405628)
chr5 (157-210)||(3295259-3295312)
chr5 (227-282)||(624324-624379)
chr5 (227-282)||(1028492-1028547)
chr5 (159-282)||(12662556-12662682)
chr5 (17-52)||(24489245-24489280)
chr5 (104-242)||(26074395-26074533)
chr5 (238-280)||(15370229-15370270)
chr5 (157-215)||(15370274-15370332)
chr5 (251-284)||(3295344-3295377)
chr5 (20-53)||(13415802-13415835)
chr5 (20-49)||(38427306-38427335)
chr5 (20-56)||(1028559-1028595)
chr5 (20-52)||(9498696-9498728)
chr5 (20-52)||(34753067-34753099)
[»] chr7 (24 HSPs)
chr7 (124-284)||(45754841-45754999)
chr7 (111-284)||(47129221-47129391)
chr7 (104-226)||(48243313-48243435)
chr7 (164-284)||(1085528-1085648)
chr7 (147-282)||(37533260-37533394)
chr7 (157-284)||(30245281-30245408)
chr7 (157-236)||(40094673-40094752)
chr7 (147-280)||(37532907-37533039)
chr7 (156-284)||(30244478-30244606)
chr7 (104-237)||(45434427-45434558)
chr7 (157-284)||(30253696-30253823)
chr7 (157-282)||(45433369-45433491)
chr7 (147-233)||(28300474-28300559)
chr7 (158-226)||(7553826-7553894)
chr7 (227-281)||(11845320-11845373)
chr7 (20-52)||(28300295-28300327)
chr7 (224-283)||(6054687-6054745)
chr7 (175-284)||(8128363-8128473)
chr7 (227-284)||(30245199-30245255)
chr7 (20-69)||(45754782-45754831)
chr7 (20-52)||(1085658-1085690)
chr7 (252-284)||(7517706-7517738)
chr7 (16-52)||(37533402-37533438)
chr7 (20-52)||(45433325-45433357)
[»] chr2 (33 HSPs)
chr2 (64-284)||(40734008-40734231)
chr2 (160-284)||(3672827-3672951)
chr2 (104-282)||(23346364-23346540)
chr2 (197-282)||(42514777-42514861)
chr2 (147-282)||(6421513-6421646)
chr2 (104-234)||(36785798-36785928)
chr2 (198-282)||(37106052-37106136)
chr2 (187-282)||(35580659-35580754)
chr2 (162-284)||(962724-962844)
chr2 (212-284)||(14745627-14745699)
chr2 (104-282)||(7598356-7598533)
chr2 (148-246)||(40679895-40679993)
chr2 (228-284)||(3673194-3673249)
chr2 (213-284)||(38796578-38796650)
chr2 (147-243)||(29676694-29676790)
chr2 (64-230)||(40733698-40733858)
chr2 (185-284)||(6421857-6421956)
chr2 (198-284)||(36178552-36178637)
chr2 (20-57)||(5367534-5367571)
chr2 (20-52)||(30313261-30313293)
chr2 (20-52)||(40679671-40679703)
chr2 (20-52)||(42514733-42514765)
chr2 (226-284)||(15511471-15511527)
chr2 (157-224)||(38796463-38796530)
chr2 (216-254)||(30312945-30312983)
chr2 (20-52)||(3672785-3672817)
chr2 (20-52)||(5543040-5543072)
chr2 (20-52)||(14745336-14745368)
chr2 (20-52)||(14745709-14745741)
chr2 (20-52)||(15880347-15880379)
chr2 (20-52)||(30323548-30323580)
chr2 (20-52)||(33954304-33954336)
chr2 (20-52)||(37106008-37106040)
[»] scaffold0702 (2 HSPs)
scaffold0702 (198-284)||(460-546)
scaffold0702 (228-284)||(124-179)
[»] scaffold0734 (1 HSPs)
scaffold0734 (157-282)||(5525-5647)
[»] scaffold0078 (1 HSPs)
scaffold0078 (157-239)||(5153-5233)
[»] scaffold0113 (1 HSPs)
scaffold0113 (214-247)||(39616-39649)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 41359529 - 41359797
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaaggttatgggattttgagtccatcaattcatcatgctcccattcaagcgaaagcgtatcgccgttg 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||     
T  41359529 caaaagagacgccacactcttacccaaaaccttaaggttatgggttttttagtccatcaattcatcatgctccccttcaagcgaaagcgtatcgccgttc 41359628  T
Q  116 atggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatgggg 215  Q
    || |||||||||||||| || ||||  |||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  41359629 atagtttctccgcaaacggaccgacactgctttgtaccgctgttgctgctttatgcgcagacggactggctgcctcgatcttacccttcgtcgaatgggg 41359728  T
Q  216 ctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41359729 ctatgataccactattgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 41359797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 282
Target Start/End: Original strand, 3135308 - 3135484
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||| ||||| ||||||||||||||||||| ||||  || ||||||| |  ||||||||||| |||| |||||||||  |||||||| || |||||||    
T  3135308 gtatcgtcgttgctggtttctccgcaaacagaccgacactg-tttgtaccgccgttgctgctttctgcgtaaacggaccaactgcctcgttcgtaccctt 3135406  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
     ||||||||||||||||||||||| |||||||||   || ||| || ||||||||| ||||||||||||||||||||||    
T  3135407 tgtcgaatggggctctgataccacagttgggtcatgaggagag-tcagggggaccgtccacatcgaggctagaacaacc 3135484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 37990882 - 37991009
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtca-ctgggggagctcgggggg 255  Q
    ||||||| ||| |||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||   |||||||| | | |||    
T  37990882 gttgctggtttctgcgcaaacgaaccggctgcctcgatcgtaccctttgtcgaatggggccctgataccactgttgggtcatgagggggagc-ctgaggg 37990980  T
Q  256 accgcccacatcgaggctagaacaaccac 284  Q
    |||| ||||||||||||||||||||||||    
T  37990981 accgtccacatcgaggctagaacaaccac 37991009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 104 - 284
Target Start/End: Original strand, 33803106 - 33803284
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| ||| |||||||||| | || ||||  ||||| ||||||| ||||||||||||||||||||||||| |||||||||  || |||||||    
T  33803106 gtatcgccgttgctggcttctccgcaa-cggaccgacactgctt-gtactgtcgttgctgctttatgcgcaaacggactggctgcctcagtcgtaccctt 33803203  T
Q  204 cgtcgaat-ggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||| | |||||||||||||||||| ||||| ||  ||||| |  ||||||||| ||||||||||||||||||||||||    
T  33803204 cgtcgaatcgaggctctgataccactgtt-ggtcattgatgggag-tttgggggaccgtccacatcgaggctagaacaaccac 33803284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 158 - 284
Target Start/End: Original strand, 54018104 - 54018230
Alignment:
Q  158 ttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcgggggga 256  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||| |||  || |||||||| |||||||| |||||| |  |||| || ||||||    
T  54018104 ttgctgctttctgcgcaaacggaccggctgcctcgatcgcacccttcgttgaaccggagctctgatgccactgtttggtcaccgtaggag-tcaggggga 54018202  T
Q  257 ccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||||||    
T  54018203 ccgcccacatcgaggctagaacaaccac 54018230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 22303850 - 22303987
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggga 245  Q
    |||||| || ||||||||||| ||||||| | ||||||| |||||  ||  |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  22303850 ttgtaccgtcgttgctgctttctgcgcaa-ctgaccggcggcctctgtcgcacccttcgtcgaaccggggctctgataccactgttaggtcactggggga 22303948  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||   |||||||   ||||||||||||||||||||||||    
T  22303949 gccttgggggacaatccacatcgaggctagaacaaccac 22303987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 54017780 - 54017848
Alignment:
Q  215 gctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||    
T  54017780 gctctgataccactgttgggtcactgggggagc-cagggggaccgcccacatcgaagctagaacaaccac 54017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 52634887 - 52634804
Alignment:
Q  197 tacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaac 281  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| | | ||||| |||||||||||||    
T  52634887 tacccttcgtcgaagggggctctgatatcactgttgggtcactgggggagctcg-ggggacagtctacatcaaggctagaacaac 52634804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 22304426 - 22304321
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcact--gggggagctcggggggaccgcccacatcgaggctag 275  Q
    |||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||| |  |||| ||||  ||||||||| |||||||||||||||    
T  22304426 gaccggctgcctcggtcgtacccttcgtcgaaccggggctctgataccactgttgggtcagtgaggggaagct-agggggaccgtccacatcgaggctag 22304328  T
Q  276 aacaacc 282  Q
    |||||||    
T  22304327 aacaacc 22304321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 15773085 - 15772980
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaatg-gggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    ||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||   |||||| ||    |||||| ||||||||||| |||||    
T  15773085 gaccggcggcctcgatcgtacccttcgtcgaatcagggctctgataccactgttgggtcatgaggggag-tcaaaaggaccgtccacatcgaggttagaa 15772987  T
Q  278 caaccac 284  Q
    |||||||    
T  15772986 caaccac 15772980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 35946704 - 35946652
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaa 280  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  35946704 tgttgggtcactgggggagctttgggggaccgtccacatcgaggctagaacaa 35946652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 53577616 - 53577490
Alignment:
Q  158 ttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatgggg-ctctgataccactgttgggtcac-tgggggagctcgggggg 255  Q
    |||||||||| ||||||| | ||||||| |||||| || ||||||||||||||  ||| |||||||||||||||||||||||   | |||| || |||||    
T  53577616 ttgctgctttctgcgcaa-ctgaccggcggcctcggtcgtacccttcgtcgaaccgggactctgataccactgttgggtcacaaagaggagttc-ggggg 53577519  T
Q  256 accgcccacatcgaggctagaacaaccac 284  Q
    |||  ||||| ||||||||||||||||||    
T  53577518 accatccacaccgaggctagaacaaccac 53577490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 25739376 - 25739451
Alignment:
Q  205 gtcgaatggggctctgataccactgttgggtcactg--ggggagctcggggggaccgcccacatcgaggctagaac 278  Q
    |||||| ||||||||||||||||| ||| |||||||  |||||||   ||||||||| ||||||||||||||||||    
T  25739376 gtcgaacggggctctgataccactattgcgtcactgaaggggagccttgggggaccgtccacatcgaggctagaac 25739451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 9240065 - 9239940
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatgg-ggctctgataccactgttgggtcactgggggagctcgggggg 255  Q
    ||||||||||| ||||||| ||||| | ||||||||||| ||||||| || |||  | || |||||||| |||||||| |||   |||||||| |||||     
T  9240065 gttgctgctttctgcgcaa-cggactgactgcctcgatcgtaccctttgttgaaccgaggttctgatactactgttggatcatgaggggagcttggggg- 9239968  T
Q  256 accgcccacatcgaggctagaacaacca 283  Q
    |||| ||||||||||||||||| |||||    
T  9239967 accgtccacatcgaggctagaaaaacca 9239940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 47964957 - 47964989
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||||||||||||||||||    
T  47964957 agagacgccacactcttacccaaaatcttaagg 47964989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 3135033 - 3135088
Alignment:
Q  182 cggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtca 237  Q
    ||||||||||| || ||||||| |||||| || |||||||||||||| ||||||||    
T  3135033 cggctgcctcggtcgtaccctttgtcgaacggtgctctgataccactattgggtca 3135088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 32462805 - 32462879
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgtt 231  Q
    ||||||||||| |||||||||| |||| ||||  || || ||||||||||||||   ||||||||| ||||||||    
T  32462805 gttgctgctttctgcgcaaacgaaccgactgctccggtcgtacccttcgtcgaactaggctctgatgccactgtt 32462879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 1634314 - 1634346
Alignment:
Q  251 gggggaccgcccacatcgaggctagaacaacca 283  Q
    ||||||||| |||||||||||||||||||||||    
T  1634314 gggggaccgtccacatcgaggctagaacaacca 1634346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 4823775 - 4823739
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaagg 52  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  4823775 caaaaaagacaccacactcttacccaaaatcttaagg 4823739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 32462742 - 32462782
Alignment:
Q  64 tgagtccatcaattcatcatgct-cccattcaagcgaaagc 103  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  32462742 tgagtccatcaattcatcatgctcccccttcaagcgaaagc 32462782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 42342132 - 42342164
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  42342132 agagacgccacactcttacccaaaaccttaagg 42342164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 47964560 - 47964592
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  47964560 agagacgccacactcttacccaaaaccttaagg 47964592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 53577715 - 53577655
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaatgggg-ctctgataccactgttgggtcac 238  Q
    ||||||| |||||| || |||||||| |||||  ||| |||||||||||||||||||||||    
T  53577715 gaccggcggcctcggtcgtacccttcttcgaaccgggactctgataccactgttgggtcac 53577655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 105 - 284
Target Start/End: Complemental strand, 37556032 - 37555855
Alignment:
Q  105 tatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttc 204  Q
    ||||||||||| |||||||||||||||| || ||||  |||||||||| |  ||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  37556032 tatcgccgttgctggtttctccgcaaacggaccgacactgctttgtaccgccgttgctgctttttgcgcaatcggaccagctgcctcgatcatacccttc 37555933  T
Q  205 gtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    | ||||||||||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||||||| ||||||||||    
T  37555932 gccgaatggggctctgataccactgttgggtcattgggggagctc-gagcgaccg-ccacatcgaggcttgaacaaccac 37555855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 34649743 - 34649564
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||| ||||| |||||||||||||||  || |||   ||| |||||| || |||| |||||| |||||||||||||||||||||||| || |||||||    
T  34649743 gtatcgtcgttgctggtttctccgcaaatggaccgaaactgc-ttgtaccgtcgttgttgctttctgcgcaaacggaccggctgcctcggtcgtaccctt 34649645  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    | ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||    
T  34649644 catcgaacggggctctgataccactgttgggtcactagggaagctccgggggaccgtccacatcgaggctagaacaaccac 34649564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 41157298 - 41157117
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||| ||||| |||||||||||||||| ||  |||  | ||| |||| || |||| |||||||||||||||||||||| |||||| | || |||||||    
T  41157298 gtatcgtcgttgttggtttctccgcaaacggactgacactactt-gtaccgtcgttgttgctttatgcgcaaacggaccgactgccttggtcgtaccctt 41157200  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactg--ggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
     |||||| ||||||||||||||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||    
T  41157199 tgtcgaacggggctctgataccattgttgggtcactgaaggggagccttgggggaccgcccacatcgaggctagaacaaccac 41157117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 34364760 - 34364635
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcgggggg 255  Q
    ||||||||||| ||| ||||||||||||||| || | || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||     
T  34364760 gttgctgctttctgcacaaacggaccggctgtctgggtcgtacccttcgtcgaaccggggctctgataccactgttgggtcactgggggagctc-aggga 34364662  T
Q  256 accgcccacatcgaggctagaacaacc 282  Q
    |||  |||||||||||||||| |||||    
T  34364661 accatccacatcgaggctagagcaacc 34364635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 282
Target Start/End: Original strand, 41184325 - 41184438
Alignment:
Q  171 cgcaaacggaccggctgcctcgatcttacccttcgtcga-atggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcg 268  Q
    |||||||||||||| ||||||| ||||||||||||||||  | ||||||||||||||||||||| ||| || ||||||||||||||||||| | ||||||    
T  41184325 cgcaaacggaccggttgcctcggtcttacccttcgtcgagctcgggctctgataccactgttggatcagtgaggggagctcggggggaccgtcgacatcg 41184424  T
Q  269 aggctagaacaacc 282  Q
    ||||| ||||||||    
T  41184425 aggctggaacaacc 41184438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 44290751 - 44290854
Alignment:
Q  180 accggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcact-gggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    ||||||||||||| ||  |||||||||||||  |||||||||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||    
T  44290751 accggctgcctcggtcgcacccttcgtcgaaccggggctctgataccactgttgggtcagtggggggagctc-gggggaccgtccacatcgaggctagaa 44290849  T
Q  278 caacc 282  Q
    |||||    
T  44290850 caacc 44290854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 31767093 - 31767193
Alignment:
Q  183 ggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||||||||   ||| ||||  ||||||||| |||||||||| |||||||||||    
T  31767093 ggctgcctcggtcgtacccttcgtcgaacggggctctgataccactgttgggtcatgagggaagct-tgggggaccgtccacatcgagtctagaacaacc 31767191  T
Q  283 ac 284  Q
    ||    
T  31767192 ac 31767193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 50051921 - 50052053
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggga 245  Q
    ||||||||| ||||| ||||| ||| ||| |  ||||||||||||| ||   ||||| ||||||  |||||||||||||||||||||||||||  |||||    
T  50051921 ttgtactgtcgttgcggctttctgcccaacc--accggctgcctcggtcgcgccctttgtcgaaccggggctctgataccactgttgggtcacgagggga 50052018  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaac 281  Q
    |||| ||||||| | ||||||||||| |||||||||    
T  50052019 gctc-gggggactgtccacatcgaggttagaacaac 50052053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 44290435 - 44290488
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  44290435 tgttgggtcactgggggagctcggggg-accgtccacatcgaggctagaacaacc 44290488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 22077418 - 22077525
Alignment:
Q  175 aacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggct 273  Q
    |||||||||||||||| | || ||||||||||||||   |||||||||| |||||||||||||||  ||||||| | ||||||||| ||| ||||| |||    
T  22077418 aacggaccggctgccttggtcgtacccttcgtcgaacctgggctctgatgccactgttgggtcacaaggggagc-ctgggggaccgtccatatcgatgct 22077516  T
Q  274 agaacaacc 282  Q
     ||||||||    
T  22077517 tgaacaacc 22077525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 22077752 - 22077859
Alignment:
Q  175 aacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggct 273  Q
    |||||||||||||||| | || ||||||||||||||   |||||||||| |||||||||||||||  ||||||| | || |||||| ||||||||| |||    
T  22077752 aacggaccggctgccttggtcatacccttcgtcgaacctgggctctgatgccactgttgggtcacaaggggagc-ctggaggaccgtccacatcgatgct 22077850  T
Q  274 agaacaacc 282  Q
     ||||||||    
T  22077851 tgaacaacc 22077859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 66395 - 66502
Alignment:
Q  175 aacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggct 273  Q
    |||||||||||||||||| || ||||||||||||||  ||| |||||||| |||||||||||||   ||||||||  ||   |||| |||||| ||||||    
T  66395 aacggaccggctgcctcggtcgtacccttcgtcgaaccgggactctgatatcactgttgggtcatgaggggagct-tggataaccgtccacattgaggct 66493  T
Q  274 agaacaacc 282  Q
    |||||||||    
T  66494 agaacaacc 66502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 9956122 - 9956037
Alignment:
Q  197 tacccttcgtcgaatgg-ggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||||||  | |||||||||||||||||||||||||  || |||| |  ||||||||| ||||||||||||||| |||||    
T  9956122 tacccttcgtcgaaccgaggctctgataccactgttgggtcacgaggagagc-ctaggggaccgctcacatcgaggctagagcaacc 9956037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 21378035 - 21378091
Alignment:
Q  227 ctgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||| | |||| |||| |||||| |||||||||||||||||    
T  21378035 ctgttgggtcactgggggagcgcagggg-accgtccacattgaggctagaacaaccac 21378091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 4266798 - 4266830
Alignment:
Q  252 ggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||||||||||||||||||||||    
T  4266798 ggggaccgcccacatcgaggctagaacaaccac 4266830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 17294773 - 17294706
Alignment:
Q  214 ggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||| |||||||| ||||||  ||||||||| ||| ||||| |||||||||||||||| |||||    
T  17294773 ggctctgatgccactgttaggtcacgaggggagctc-gggcgaccgtccacatcgaggctagagcaacc 17294706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 41142545 - 41142499
Alignment:
Q  237 actgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  41142545 actgggggaactcggggg-accgtccacatcgaggctagaacaaccac 41142499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 284
Target Start/End: Complemental strand, 41157532 - 41157501
Alignment:
Q  253 gggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||||||||||    
T  41157532 gggaccgcccacatcgaggctagaacaaccac 41157501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 10351276 - 10351246
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaa 50  Q
    |||||||||||||||||||||||||||||||    
T  10351276 agagacgccacactcttacccaaaatcttaa 10351246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 22077537 - 22077569
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  22077537 agagacgccacactcttacccaaaaccttaagg 22077569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 45493949 - 45494006
Alignment:
Q  226 actgttgggtcactggggg-agctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||| |||||| ||||  ||||||||| ||||||||||||| ||||||||||    
T  45493949 actgttgggtcattggggggagct--gggggaccgtccacatcgaggcttgaacaaccac 45494006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 48588414 - 48588518
Alignment:
Q  180 accggctgcctcgatcttacccttcgtcgaatgggg-ctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    ||||||||||||| |   ||||||||| |||  ||| ||||||||||||| |||| ||| || ||||| ||  ||| ||||| |||||||||||||||||    
T  48588414 accggctgcctcggttgcacccttcgttgaaccgggactctgataccacttttggttcagtgaggggaactttgggcgaccgtccacatcgaggctagaa 48588513  T
Q  278 caacc 282  Q
    |||||    
T  48588514 caacc 48588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 43174448 - 43174267
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| ||||||||||||||||||| ||||  |||||||||| || |||||| |||| |||||||||||||||||||||||||||||||| ||    
T  43174448 gtatcgccgttgttggtttctccgcaaacagaccgacactgctttgtaccgtcgttgctactttctgcgcaaacggaccggctgcctcgatcttaccttt 43174349  T
Q  204 cgtcgaatggggctctgataccactgttgggtcact--gggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||| || ||| |||||||||||||||||   |  |||||||||| ||||||||| ||||||| ||||| ||||||||||    
T  43174348 cgtcgaacggtgctttgataccactgttgggtttgtgagggggagctc-gggggaccgtccacatcaaggcttgaacaaccac 43174267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 23817573 - 23817711
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtca-ctggggga 245  Q
    |||||| || ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |  |||||    
T  23817573 ttgtaccgtcgttgctgctttctgcgcaaacagaccggctgcctcgatcgtacccttcgtcgaatggggctatgataccactgttggatcatcgagggga 23817672  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||  ||||||||| ||||||||||||||||||||||||    
T  23817673 gctatgggggaccgtccacatcgaggctagaacaaccac 23817711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 54108787 - 54108663
Alignment:
Q  158 ttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggac 257  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||| ||||||||||||||||||||||  |||||||    
T  54108787 ttgctgctttatgcgcaaacggaccggctgcctcg-tcgtacccttcgtcgaacgtggctctgataccgctgttgggtcactgggggagctatgggggac 54108689  T
Q  258 cgcccacatcgaggctagaacaaccac 284  Q
    || |||||| |||||||||||||||||    
T  54108688 cg-ccacattgaggctagaacaaccac 54108663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 39404326 - 39404144
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactg---ttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacc 200  Q
    ||||||||||||||||||||||||||||| || ||||  ||||| | ||||   | ||||||||||| | |||||||||||||||||||||| || ||||    
T  39404326 gtatcgccgttgatggtttctccgcaaacggaccgacactgctt-gcactgccgtcgttgctgctttctacgcaaacggaccggctgcctcggtcatacc 39404228  T
Q  201 cttcgtcgaatggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||  | |  |||||||||||||||| | | || ||||||||| ||||||||| ||||||||||||||||||||||||    
T  39404227 cttcgtcgaacagtgtcctgataccactgttggattagtgaggggagctc-gggggaccgtccacatcgaggctagaacaaccac 39404144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 282
Target Start/End: Original strand, 22028221 - 22028397
Alignment:
Q  106 atcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcg 205  Q
    |||| ||||| |||||||||||||||| || ||||  | ||| |||| || |||| |||||||||| ||||||||| | ||| |||| || |||||||||    
T  22028221 atcgtcgttgctggtttctccgcaaacggaccgacactactt-gtaccgtcgttgttgctttatgcacaaacggactgactgtctcggtcatacccttcg 22028319  T
Q  206 tcgaatggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||| ||||||| |||||||||||||||||| || ||||||||  ||||||||| |||||| |||||||||||||||    
T  22028320 tcgaacggggctccgataccactgttgggtcagtgaggggagctttgggggaccgtccacattgaggctagaacaacc 22028397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 282
Target Start/End: Complemental strand, 20826142 - 20825964
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| |||||||||||||||| |||| ||  ||||| |||| |  ||||||||||| |||||||| ||||||||||||||| || |||||||    
T  20826142 gtatcgccgttgctggtttctccgcaaacggatcaacactgctt-gtaccgccgttgctgctttctgcgcaaatggaccggctgcctcggtcgtaccctt 20826044  T
Q  204 cgtcgaa-tggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||| |||||||||||| |||||||||| ||| ||  ||||||   ||||||| | ||||||| ||||||||||||||    
T  20826043 cgtcgaattggggctctgatgccactgttggatcattgaagggagc-atgggggactgtccacatcaaggctagaacaacc 20825964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 41370588 - 41370483
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaatgggg-ctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    |||||||||||||| ||  |||||||||||||||||| |||||||| ||||||||||||||||||| || || ||||||||| |||||||||||||||||    
T  41370588 gaccggctgcctcggtcgcacccttcgtcgaatgggggctctgatatcactgttgggtcactggggaagttc-gggggaccgtccacatcgaggctagaa 41370490  T
Q  278 caaccac 284  Q
    |||||||    
T  41370489 caaccac 41370483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 284
Target Start/End: Complemental strand, 2740995 - 2740824
Alignment:
Q  103 cgtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccct 202  Q
    ||||||||||||| ||||||||| |||||| || ||||      |||||| | |||||||||||| |||||||||||| ||||||||||| || ||||||    
T  2740995 cgtatcgccgttgctggtttctctgcaaacggaccgacacga--ttgtaccgctgttgctgctttctgcgcaaacggatcggctgcctcggtcgtaccct 2740898  T
Q  203 tcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||| |||||||||||||||||||||        ||||||||| ||||||||  ||| ||||||||||||||||||||    
T  2740897 tcgtcgaacggggctctgataccactgttg-------aggggagctc-gggggaccatccatatcgaggctagaacaaccac 2740824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 282
Target Start/End: Complemental strand, 3341070 - 3340935
Alignment:
Q  146 tttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggg 244  Q
    ||||||| || ||||||||||| ||||||| | |||| ||  ||||| || |||| |||||||||  |||||||||||||||||||||||||||||||||    
T  3341070 tttgtaccgtcgttgctgctttctgcgcaa-ctgaccagcgacctcggtcgtaccgttcgtcgaaccggggctctgataccactgttgggtcactggggg 3340972  T
Q  245 agctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||  || ||||| ||||||||||||||||||||||    
T  3340971 agctc-aggagaccgtccacatcgaggctagaacaacc 3340935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 16889440 - 16889562
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcgggggga 256  Q
    ||||||||||| ||| |||||||||||| ||||||  || ||||||||||||||  |||||||| ||||| |||||||||||  ||||||||| | ||||    
T  16889440 gttgctgctttctgcacaaacggaccggttgcctcagtcgtacccttcgtcgaacagggctctggtaccattgttgggtcacgtggggagctc-gaggga 16889538  T
Q  257 ccgcccacatcgaggctagaacaa 280  Q
    ||| ||||||||||| ||||||||    
T  16889539 ccgtccacatcgaggttagaacaa 16889562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 50002661 - 50002554
Alignment:
Q  175 aacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggcta 274  Q
    |||||| |||||||||||| | || |||| |||||| ||||||||||||||| ||||||||||||  ||| | |  ||||||||||||||||||||||||    
T  50002661 aacggatcggctgcctcgaacgtatcctttgtcgaacggggctctgataccattgttgggtcacttagggtggttcgggggaccgcccacatcgaggcta 50002562  T
Q  275 gaacaacc 282  Q
    ||||||||    
T  50002561 gaacaacc 50002554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 31691416 - 31691284
Alignment:
Q  146 tttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactggggga 245  Q
    ||||||| ||| |||||| ||| |||||||||||||| || |||||| || ||||||||||| || ||| |||| ||||||||||||||||| |||||||    
T  31691416 tttgtaccgtttttgctgttttctgcgcaaacggaccagcggcctcggtcgtacccttcgtcaaacggg-ctctaataccactgttgggtcattggggga 31691318  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaa 280  Q
    |||| |  ||| || ||||||||||||||||||||    
T  31691317 gctc-gaaggatcgtccacatcgaggctagaacaa 31691284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 49076736 - 49076859
Alignment:
Q  158 ttgctgctttatgcgcaaac-ggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcgggggga 256  Q
    ||||||||||||||| |||  |||| |||||||||| |  ||||||| |||||| |||||||||||||||||||||||||| || ||||||||  |||||    
T  49076736 ttgctgctttatgcgtaaaatggactggctgcctcggtagtaccctttgtcgaacggggctctgataccactgttgggtca-tgagggagctc-agggga 49076833  T
Q  257 ccgcccacatcgaggctagaacaacc 282  Q
    | | ||||||||||||||||||||||    
T  49076834 cagtccacatcgaggctagaacaacc 49076859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 25483540 - 25483462
Alignment:
Q  205 gtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||| |||||| ||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||    
T  25483540 gtcgaacggggctatgataccactgttgggtcactgggggagc-cagggagaccgtccacatcgaggctagaacaaccac 25483462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 45489634 - 45489743
Alignment:
Q  173 caaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggc 272  Q
    |||||||||||| || |||| || ||||||||||| || ||| ||||||||||| |||||||||||||| |||| |  |||||| || |||||||||| |    
T  45489634 caaacggaccggttgtctcggtcgtacccttcgtcaaacgggactctgataccattgttgggtcactggaggag-tttgggggatcggccacatcgagac 45489732  T
Q  273 tagaacaacca 283  Q
    |||||||||||    
T  45489733 tagaacaacca 45489743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 50627679 - 50627748
Alignment:
Q  159 tgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccact 228  Q
    ||||||||| || ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  50627679 tgctgctttctgtgcaaacgaaccggctgcctcgatcgtaccctttgtcgaacggggctctgataccact 50627748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 3271971 - 3271915
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  3271971 tgttgggtcattgggggagctcggggggactgtccacatcgaggctagaacaaccac 3271915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 45496803 - 45496678
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcact-gggggagctcggggg 254  Q
    ||||||||||| | ||||| | ||||||| |||||| ||  |||||||||||||  |||||||||||||||||||||||||| |  ||||||||| | ||    
T  45496803 gttgctgctttctacgcaa-ctgaccggcggcctcggtcgcacccttcgtcgaaccggggctctgataccactgttgggtcagtaaggggagctc-gagg 45496706  T
Q  255 gaccgcccacatcgaggctagaacaacc 282  Q
    ||||| | ||||||||||||||||||||    
T  45496705 gaccgtctacatcgaggctagaacaacc 45496678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 54936378 - 54936321
Alignment:
Q  226 actgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  54936378 actgttgggtcactgggggagctcg-ggggactgtccacatcgaggctagaacaaccac 54936321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 44621252 - 44621130
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcgggggg 255  Q
    ||||||||||| |||| |||||||||||||| |||| || ||||||||||| ||   ||||||||||||||||||||| |||   | |||||    ||||    
T  44621252 gttgctgctttctgcgaaaacggaccggctgtctcggtcgtacccttcgtcaaaccagggctctgataccactgttggatcatgagaggagc----gggg 44621157  T
Q  256 accgcccacatcgaggctagaacaacc 282  Q
    |||| ||||||||||||||||| ||||    
T  44621156 accgtccacatcgaggctagaataacc 44621130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 44620892 - 44620787
Alignment:
Q  176 acggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctag 275  Q
    ||||||||||| ||||| || ||||||| | |||| ||||||||||||||||| |||| |||   ||||||||  ||||||||| ||||||||||| ||     
T  44620892 acggaccggctacctcggtcgtaccctttgacgaacggggctctgataccactattggatcatgaggggagct-tgggggaccgtccacatcgaggatat 44620794  T
Q  276 aacaacc 282  Q
    |||||||    
T  44620793 aacaacc 44620787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 10246182 - 10246046
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactg-gggg 244  Q
    |||||| || ||||||||||| ||| ||| | ||| ||| |||||  || |||||||| |||||  |||| |||||||||||||||||||||  | ||||    
T  10246182 ttgtaccgtcgttgctgctttctgcacaa-ctgacaggcggcctcagtcgtacccttcatcgaaccggggttctgataccactgttgggtcagcgagggg 10246084  T
Q  245 agctcggggggaccgcccacatcgaggctagaacaacca 283  Q
    |||| ||||| | || |||||||||||||||||||||||    
T  10246083 agcttggggg-agcgtccacatcgaggctagaacaacca 10246046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 18879987 - 18879932
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||| ||||||||||||| || |||| ||||||||| ||||||||||||||    
T  18879987 tgttgggtcattgggggagctcggagg-accgtccacatcgaagctagaacaaccac 18879932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 36608636 - 36608691
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||  |||||||| ||||| |||| ||||||||||||||||||||||||    
T  36608636 tgttgggtcacgaggggagcttggggg-accgtccacatcgaggctagaacaaccac 36608691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 6975496 - 6975527
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaag 51  Q
    ||||||||||||||||||||||||||||||||    
T  6975496 agagacgccacactcttacccaaaatcttaag 6975527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 19895489 - 19895424
Alignment:
Q  215 gctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||||||||||||||  |||||||||   |||||||  ||||||||||||||||||||||    
T  19895489 gctctgataccactgttgggtcatggggggagct-atggggacc-accacatcgaggctagaacaacc 19895424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 23817429 - 23817485
Alignment:
Q  226 actgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||  |||   |||| ||||||||||||||||||||||||    
T  23817429 actgttgggtcactgggggagcctggga--accgtccacatcgaggctagaacaaccac 23817485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 36572215 - 36572147
Alignment:
Q  212 ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||| |||||||||||| |||| ||| |||  ||||||||  |||||||||||| ||||||||    
T  36572215 ggggctctgatatcactgttgggtcgctggaggatctc--ggggaccgttcacatcgaggcttgaacaacc 36572147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 4955357 - 4955407
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatgggattttgagtcc 70  Q
    ||||||||||||||||||||||||| |||||||  ||||| || |||||||    
T  4955357 agagacgccacactcttacccaaaaccttaaggcaatgggtttatgagtcc 4955407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 6876048 - 6876085
Alignment:
Q  200 ccttcgtcgaatggggctctgataccactgttgggtca 237  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  6876048 ccttcgttgaagggggctctgataccactgttgggtca 6876085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 18879926 - 18879890
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  18879926 caaaagagacgtcacactcttacccaaaaccttaagg 18879890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 54342984 - 54343038
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||||  |||||||||| |||  ||||||||||||||||||||||||    
T  54342984 tgttgggtcactggga-agctcggggg-accatccacatcgaggctagaacaaccac 54343038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 282
Target Start/End: Complemental strand, 16108038 - 16107806
Alignment:
Q  64 tgagtccatcaattcatcatgctcccattcaagcgaaagc------------gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgta 151  Q
    |||||||||||||||||||||||||| |||||||| ||||            | |||||||||| |||||||| |||||||||| ||||  |||||||||    
T  16108038 tgagtccatcaattcatcatgctccccttcaagcggaagctcttactttcttgcatcgccgttgctggtttcttcgcaaacagaccgacactgctttgta 16107939  T
Q  152 ctgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactg--ggggagct 248  Q
    | |  ||||||||||| ||| |||| ||||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||  |||||| |    
T  16107938 ccgccgttgctgctttctgcacaaatggaccggctgcctcggtcatacccttcgtcgaaccggggctctgataccactgttgggtcactgaaggggag-t 16107840  T
Q  249 cggggggaccgcccacatcgaggctagaacaacc 282  Q
      |||| ||| ||||||||||||||||| |||||    
T  16107839 taggggtaccacccacatcgaggctagagcaacc 16107806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 284
Target Start/End: Original strand, 2578687 - 2578867
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| ||||||||||||||||||| ||||  |||||||||  |  ||||||||||| ||| ||| |||||||||||||||| || |||||||    
T  2578687 gtatcgccgttgttggtttctccgcaaacagaccgacactgctttgtaacgccgttgctgctttctgcccaagcggaccggctgcctcggtcgtaccctt 2578786  T
Q  204 cgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||  |||||||||||||||||||||  |||   ||||||| | ||||||||| |||||||||||  |||||||||||    
T  2578787 cgtcgaaccggggctctgataccactgttgattcatgaggggagc-ctgggggaccgtccacatcgaggtcagaacaaccac 2578867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 16454840 - 16454703
Alignment:
Q  145 ctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatg-gggctctgataccactgttgggtcactgggg 243  Q
    |||||||| || |||| |||||| |||||||||||||||| | ||||| || ||||||||||||||   ||||||||||||||||||||||||||  |||    
T  16454840 ctttgtaccgtcgttgttgctttctgcgcaaacggaccggttacctcggtcgtacccttcgtcgaacctgggctctgataccactgttgggtcacgaggg 16454741  T
Q  244 gagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  16454740 gagctcg-ggggaccgtccacatcgaggctagaacaacc 16454703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 2579344 - 2579473
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| ||||||||| ||||||||| ||||   ||||||||| |  ||||||||||| |||||||  ||||||||||||||| || |||| ||    
T  2579344 gtatcgccgttgctggtttctctgcaaacagaccgacaccgctttgtaccgccgttgctgctttctgcgcaagtggaccggctgcctcggtcgtaccgtt 2579443  T
Q  204 cgtcgaa-tggggctctgataccactgttg 232  Q
    |||||||  |||||||||||||||||||||    
T  2579444 cgtcgaaccggggctctgataccactgttg 2579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 2579017 - 2579141
Alignment:
Q  159 tgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggac 257  Q
    |||||||||||| |||||| ||| |||||||||| || ||||||||||||||  ||| |||||||| |||||||||||||   |||||||||  ||||||    
T  2579017 tgctgctttatgtgcaaactgactggctgcctcggtcgtacccttcgtcgaaccgggactctgatatcactgttgggtcatgaggggagctc--ggggac 2579114  T
Q  258 cgcccacatcgaggctagaacaaccac 284  Q
    ||  |||||||||||||||||||||||    
T  2579115 cgtgcacatcgaggctagaacaaccac 2579141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 2377966 - 2377880
Alignment:
Q  198 acccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||||||||| ||||||    
T  2377966 acccttcgtcgaaccggggctctgataccactgttgggtcactggggaagctc-gggggaccttccacatcgaggctagaaaaaccac 2377880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 2579779 - 2579902
Alignment:
Q  158 ttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcgggggga 256  Q
    |||||||||| |||||||||| || |||||||||| || |||||||||| |||  |||||||||||||||||||||||| |   ||||||||   |||||    
T  2579779 ttgctgctttctgcgcaaacgaactggctgcctcggtcgtacccttcgtggaaccggggctctgataccactgttgggtaatgaggggagct--tgggga 2579876  T
Q  257 ccgcccacatcgaggctagaacaacc 282  Q
    ||  ||||||||||||||||||||||    
T  2579877 ccttccacatcgaggctagaacaacc 2579902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 35210434 - 35210332
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaatgg-ggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    |||||||| | ||| || ||||||||||||||  | |||| ||||||||||||||||||||||||||||  |  |||||||| ||||||||||||||||     
T  35210434 gaccggctacttcggtcgtacccttcgtcgaaccgaggctttgataccactgttgggtcactgggggag--ccaggggaccgtccacatcgaggctagag 35210337  T
Q  278 caacc 282  Q
    |||||    
T  35210336 caacc 35210332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 29518765 - 29518631
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggga 245  Q
    |||||| || ||||||||||| ||||||| |  |||||| | |||| ||  |||||||||||||  |||||||||||||||||||||||| |   | |||    
T  29518765 ttgtaccgtcgttgctgctttctgcgcaa-ctaaccggcggtctcggtcgcacccttcgtcgaaccggggctctgataccactgttgggttatgagagga 29518667  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    || | ||||||||| ||||||||||||||||||||||    
T  29518666 gcgc-gggggaccgtccacatcgaggctagaacaacc 29518631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 10074259 - 10074395
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggga 245  Q
    |||||| || |||||| |||| ||||||| | ||||||| |||||| || |||||||| |||||  ||||||||||||| |  ||||||||||  |||||    
T  10074259 ttgtaccgtcgttgctactttctgcgcaa-ctgaccggcggcctcggtcgtacccttcttcgaaccggggctctgatacaagagttgggtcacaagggga 10074357  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    || | |||||||   ||||||||||||||||||||||||    
T  10074358 gc-ctgggggactatccacatcgaggctagaacaaccac 10074395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 16108233 - 16108179
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| || |||||||    
T  16108233 tgttgggtcactgggggagctcggagggaccgtccacatcgaggttataacaacc 16108179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 26544279 - 26544204
Alignment:
Q  180 accggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggg 254  Q
    ||||||||||||| ||  ||||||| |||||  |||||||| |||||| |||||||||||||||| ||||||||||    
T  26544279 accggctgcctcggtcgcacccttcatcgaaccggggctctaataccagtgttgggtcactggggaagctcggggg 26544204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 1127476 - 1127426
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatgggattttgagtcc 70  Q
    ||||||||||||||||||||||||| |||||||| ||||| || |||||||    
T  1127476 agagacgccacactcttacccaaaaccttaaggtaatgggtttatgagtcc 1127426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 3409518 - 3409452
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggg 244  Q
    |||||||||||||| || ||  ||||||||||  ||||||||||||||||| |||||||||||||||    
T  3409518 gaccggctgcctcggtcatatacttcgtcgaaccggggctctgataccactattgggtcactggggg 3409452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 10073895 - 10073977
Alignment:
Q  156 tgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtca 237  Q
    ||||||| |||| | |||||||||||||||||||||| || |||| ||||| |||  |||| |||||||||| ||||||||||    
T  10073895 tgttgctactttctacgcaaacggaccggctgcctcggtcgtacctttcgttgaaccggggatctgataccattgttgggtca 10073977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 35210602 - 35210554
Alignment:
Q  227 ctgttgggtcactgggggagctcggggggaccgcccacatcgaggctaga 276  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||||    
T  35210602 ctgttgggtcactgggggagc-cagggggaccgtccacatcgaggctaga 35210554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 2378307 - 2378252
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||| | | |||||||||| |||| ||||||||||||||||||||||||    
T  2378307 tgttgggtcactagagaagctcggggg-accgtccacatcgaggctagaacaaccac 2378252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 1846929 - 1846876
Alignment:
Q  227 ctgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||    
T  1846929 ctgttgggtca-tggggaagctcggggg-accgtccacatcgaggctagaacaacc 1846876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 2578481 - 2578524
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaaggttatggg 59  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||    
T  2578481 caaaagagacaccacactcttacccaaaaccttaaggctatggg 2578524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 14748328 - 14748374
Alignment:
Q  237 actgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  14748328 actgggggagcgcggggg-accgtccacatcgaggctagaacaaccac 14748374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 12071614 - 12071723
Alignment:
Q  175 aacggaccggctgcctcgatcttacccttcgtcgaatgggg-ctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggct 273  Q
    |||||| | ||||||| | || ||| |||| |||||| ||| |||||||||||||||| |||||   ||||||||  |||| ||||  ||||||||||||    
T  12071614 aacggatcagctgccttggtcgtactcttcatcgaatcgggactctgataccactgttaggtcatgaggggagcttagggg-accgttcacatcgaggct 12071712  T
Q  274 agaacaaccac 284  Q
    |||||||||||    
T  12071713 agaacaaccac 12071723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 12071733 - 12071783
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatgggattttgagtcc 70  Q
    ||||||||||||||||||||||||| |||||||| || || || |||||||    
T  12071733 agagacgccacactcttacccaaaaccttaaggtcataggtttatgagtcc 12071783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 2578873 - 2578910
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaaggt 53  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  2578873 caaaagagacaccacactcttacccaaaaccttaaggt 2578910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 2843714 - 2843681
Alignment:
Q  251 gggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||| ||||||||||||||||||||||||    
T  2843714 gggggaccgtccacatcgaggctagaacaaccac 2843681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 16455075 - 16455035
Alignment:
Q  241 ggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  16455075 ggggagctcggggg-accgtccacatcgaggctagaacaacc 16455035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 6071248 - 6071216
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||| ||||||||||||||    
T  6071248 agagacgccacactcttatccaaaatcttaagg 6071216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 8482042 - 8482010
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  8482042 agagacaccacactcttacccaaaatcttaagg 8482010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 12085076 - 12085108
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  12085076 agagacgccacactcttacccaaaaccttaagg 12085108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 16454691 - 16454659
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||| ||||||||||||||    
T  16454691 agagacgccacactcttatccaaaatcttaagg 16454659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 16455023 - 16454991
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  16455023 agagacgccacactcttacccaaaaccttaagg 16454991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 278
Target Start/End: Complemental strand, 147756 - 147583
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||| ||||| |||||||||||||||| || ||||  ||||| |||| | |||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  147756 gtatcgtcgttgttggtttctccgcaaacggaccgacactgctt-gtaccgctgttgctgctttctgcgcaaacggactggctgcctcgatcgtaccctt 147658  T
Q  204 cgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaac 278  Q
     ||||||  |||||||||||| ||||||||||||| ||||||||||  |||||||| |||||||| | ||||||||    
T  147657 tgtcgaaccggggctctgatatcactgttgggtca-tgggggagctatgggggaccacccacatcaatgctagaac 147583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 158 - 284
Target Start/End: Original strand, 3037874 - 3038001
Alignment:
Q  158 ttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcact--gggggagctcgggggg 255  Q
    |||||||||| | |||||||||||||||||||| | || |||| || |||||| ||||||||||||||||||||||||||||  |||||||||| |||||    
T  3037874 ttgctgctttctacgcaaacggaccggctgccttggtcctaccttttgtcgaacggggctctgataccactgttgggtcactgagggggagctc-ggggg 3037972  T
Q  256 accgcccacatcgaggctagaacaaccac 284  Q
    |||| ||||||||||||||||||||||||    
T  3037973 accgtccacatcgaggctagaacaaccac 3038001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 9483042 - 9483217
Alignment:
Q  105 tatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttc 204  Q
    |||||||||||||||||||||||||||| || ||||  |||||||||| |  ||||||||||| ||||||||||||||| |||||||| |  ||||||||    
T  9483042 tatcgccgttgatggtttctccgcaaacggaccgacactgctttgtaccgccgttgctgctttctgcgcaaacggaccgactgcctcggttgtacccttc 9483141  T
Q  205 gtcgaatggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||| || ||||||||||  ||| |||||||  |||| ||||||||  |||  |||| ||||||||||||||||||||||    
T  9483142 gtccaaaggggctctga--ccattgttgggatactgaggggagctatggga-accgtccacatcgaggctagaacaacc 9483217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 9482878 - 9483005
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    ||||||||||||||| ||||||||||||| || ||||  |||||||||| || ||||||  ||| || |||||||||||| |||||||| || |||||||    
T  9482878 gtatcgccgttgatgctttctccgcaaacggaccgacactgctttgtaccgtcgttgcttttttctgtgcaaacggaccgactgcctcggtcgtaccctt 9482977  T
Q  204 cgtcgaatggggctctgataccactgtt 231  Q
    ||||||| ||||||||||||||| ||||    
T  9482978 cgtcgaacggggctctgataccattgtt 9483005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 9309212 - 9309107
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    ||||||| |||||| || |||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  9309212 gaccggcggcctcggtcgtaccctccgtcgaactggggttctgataccacttttgggtcactgggggagctcg-ggggaccgtccacatcgaggctagaa 9309114  T
Q  278 caaccac 284  Q
    |||||||    
T  9309113 caaccac 9309107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 1014171 - 1014275
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaa 277  Q
    |||||||||||||  || ||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||| |||  |||||||||||||||||    
T  1014171 gaccggctgcctcagtcgtacccttcgtcgaaccggggctctgataccactgttgtatcactgggggagctcgggggaaccatccacatcgaggctagaa 1014270  T
Q  278 caacc 282  Q
    |||||    
T  1014271 caacc 1014275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 3038208 - 3038322
Alignment:
Q  171 cgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcact--gggggagctcggggggaccgcccacatcg 268  Q
    |||||||||||||||||||| | || ||||||| |||||| | ||||||||||||||||||||||||||  | |||||||| || |||||| ||||||||    
T  3038208 cgcaaacggaccggctgccttggtcctaccctttgtcgaacgaggctctgataccactgttgggtcactgagagggagctc-ggaggaccgtccacatcg 3038306  T
Q  269 aggctagaacaaccac 284  Q
    ||||||||||||||||    
T  3038307 aggctagaacaaccac 3038322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 284
Target Start/End: Original strand, 8918999 - 8919176
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| || ||||| ||||||| || ||||  || | ||||| || |||||| |||||||| ||| |||||||||| ||||| || |||||||    
T  8918999 gtatcgccgttgctgatttcttcgcaaacggaccgacactg-tctgtaccgtcgttgctactttatgcacaatcggaccggctacctcggtcataccctt 8919097  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||| ||| ||| ||||||||||| ||||| |||||  ||| ||||  ||||||||| ||||||||| ||||||||||||||    
T  8919098 cgttgaacgggactctgataccattgttgagtcacgagggaagct--gggggaccgtccacatcgaagctagaacaaccac 8919176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 3669948 - 3669815
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatgggg-ctctgataccactgttgggtcactggggga 245  Q
    |||||| |||||||| ||||| |||||||   ||||||||||||||||| |||||||| | ||| |||| |||||||||||| ||||||||||  |||||    
T  3669948 ttgtaccgttgttgcggctttctgcgcaac--gaccggctgcctcgatcgtacccttcattgaaggggggctctgataccaccgttgggtcacgagggga 3669851  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||  ||||||||  ||||||||||||||||||||||    
T  3669850 gct-agggggaccatccacatcgaggctagaacaacc 3669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 34835112 - 34835002
Alignment:
Q  172 gcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgagg 271  Q
    ||||||||||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||  |||||| |   |||| |  |||||||||||    
T  34835112 gcaaacggaccggctgcctcggtcgtacccttcgtcgaaccgggctctgataccactgttgggtcact-agggagcgc-aagggatcatccacatcgagg 34835015  T
Q  272 ctagaacaaccac 284  Q
    |||||||||||||    
T  34835014 ctagaacaaccac 34835002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 40518296 - 40518197
Alignment:
Q  185 ctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtca-ctgggggagctcggggggaccgcccacatcgaggctagaacaacca 283  Q
    |||||||| || |||||||||||||| ||||||||||||||| |||| ||||| | |||||||||| ||||||||| ||||||| |||||||||||||||    
T  40518296 ctgcctcggtcgtacccttcgtcgaacggggctctgataccattgtttggtcaccggggggagctc-gggggaccgtccacatcaaggctagaacaacca 40518198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 282
Target Start/End: Original strand, 18371913 - 18372024
Alignment:
Q  171 cgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgag 270  Q
    |||||||| ||||||||||||| || ||||||| ||||||   ||||||||||||||||||||||||   |||||||||||||| ||||  ||||| |||    
T  18371913 cgcaaacgaaccggctgcctcggtcgtaccctttgtcgaaccaggctctgataccactgttgggtcatgaggggagctcgggggaaccgttcacattgag 18372012  T
Q  271 gctagaacaacc 282  Q
    |||||| |||||    
T  18372013 gctagagcaacc 18372024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 9309537 - 9309480
Alignment:
Q  226 actgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  9309537 actgttgggtcactgggggagctcggggg-accgtccacatcgaggctagaacaaccac 9309480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 37544397 - 37544520
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcgggggga 256  Q
    ||||||||||||||| |||||| |||||||| |||||||  | |||||| |||| |||||||||||| ||  |||||||||   ||||| |||  |||||    
T  37544397 gttgctgctttatgcacaaacgaaccggctgtctcgatcgcatccttcgacgaagggggctctgatatcagagttgggtcatgaggggaactc--gggga 37544494  T
Q  257 ccgcccacatcgaggctagaacaacc 282  Q
     || ||||||||||||||||||||||    
T  37544495 tcgtccacatcgaggctagaacaacc 37544520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 18372206 - 18372302
Alignment:
Q  174 aaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgag 270  Q
    ||||||| ||||||||||| || ||||||| ||||||   ||||||||||||||| ||||||||   |||||||||||||| |||| ||||||||||    
T  18372206 aaacggatcggctgcctcggtcgtaccctttgtcgaaccaggctctgataccactattgggtcatgaggggagctcgggggaaccgtccacatcgag 18372302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 45122881 - 45122750
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcg-----g 251  Q
    |||| |||||| ||||||||||||| |||||||||| || ||||||||||||||   ||||||||| |||||||| |||||  ||||||| |||     |    
T  45122881 gttgttgctttctgcgcaaacggactggctgcctcggtcgtacccttcgtcgaactaggctctgatgccactgtttggtcatggggggag-tcgggccag 45122783  T
Q  252 ggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||  ||||||||||||| ||||||||||    
T  45122782 ggggaccttccacatcgaggcttgaacaaccac 45122750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 30359508 - 30359400
Alignment:
Q  172 gcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgag 270  Q
    ||||||||||||||||||||| || | ||||||||||||  || |||||||||||||||||||||| || |||||||||| ||| |||  |||||| |||    
T  30359508 gcaaacggaccggctgcctcggtcgt-cccttcgtcgaacagg-ctctgataccactgttgggtcattgaggggagctcgagggaaccatccacattgag 30359411  T
Q  271 gctagaacaac 281  Q
    |||| ||||||    
T  30359410 gctaaaacaac 30359400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 6876837 - 6876894
Alignment:
Q  226 actgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  6876837 actgctgggtcattgggggagctcggggg-accgtccacatcgaggctagaacaaccac 6876894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 9609006 - 9608932
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgt 230  Q
    |||||||||||||||||||||||||||| | ||||| || ||||||| ||||||  ||||| |||||||||||||    
T  9609006 gttgctgctttatgcgcaaacggaccggtttcctcggtcgtaccctttgtcgaaccggggcactgataccactgt 9608932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 30359725 - 30359675
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatgggattttgagtcc 70  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||||||    
T  30359725 agagacaccacactcttacccaaaatcttaaggttatgggtttatgagtcc 30359675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 40518424 - 40518356
Alignment:
Q  185 ctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggg 254  Q
    |||||||| || |||||||||||||  |||||| ||||||||||||||||||||  ||||||||||||||    
T  40518424 ctgcctcggtcatacccttcgtcgatcggggctttgataccactgttgggtcac-cggggagctcggggg 40518356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9507898 - 9507848
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatgggattttgagtcc 70  Q
    ||||||||||||||||||||||||| |||||||| ||||| || |||||||    
T  9507898 agagacgccacactcttacccaaaaccttaaggtaatgggtttatgagtcc 9507848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 43274612 - 43274665
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  43274612 tgttgggtcactgtgggagctcggggg-accgtccacatcgaggctggaacaacc 43274665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 3038020 - 3038074
Alignment:
Q  221 ataccactgttgggtcact--gggggagctcggggggaccgcccacatcgaggcta 274  Q
    |||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  3038020 ataccactgttgggtcactgagggggagctc-gggggaccgtccacatcgaggcta 3038074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 45121948 - 45121984
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||| ||||||||||||||||||    
T  45121948 caaaagagacgccacactgttacccaaaatcttaagg 45121984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 32305591 - 32305554
Alignment:
Q  22 agacgccacactcttacccaaaatcttaaggttatggg 59  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  32305591 agacgccacactcttatccaaaatcttaaggtaatggg 32305554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 33113409 - 33113441
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  33113409 agagacaccacactcttacccaaaatcttaagg 33113441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 40518187 - 40518155
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  40518187 agagacgccacactcttacccaaaaccttaagg 40518155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 1591 - 1715
Alignment:
Q  159 tgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggacc 258  Q
    ||||||||| |||||||||||||| ||||||||| |  ||||||| |||||| | |||||||||||||||||||||||||  ||||||||  |||||||     
T  1591 tgctgctttctgcgcaaacggaccagctgcctcggttgtaccctttgtcgaacgaggctctgataccactgttgggtcacgaggggagct-agggggact 1689  T
Q  259 gcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||||    
T  1690 gcccacatcgaggctagaacaaccac 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 1342 - 1465
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||| ||||| |||||||||||||||| || ||||  | ||| |||| |  ||||||||||| ||| |||||||||||||||||||| || |||||||    
T  1342 gtatcgtcgttgctggtttctccgcaaacggaccgacactactt-gtaccgccgttgctgctttctgcacaaacggaccggctgcctcggtcataccctt 1440  T
Q  204 cgtcgaa-tggggctctgataccac 227  Q
    |||||||  ||||||||||||||||    
T  1441 cgtcgaaccggggctctgataccac 1465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 1082 - 1138
Alignment:
Q  227 ctgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||||    
T  1082 ctgttgggtcactgggggagcttgggga-accgtccacatcgaggctagaacaaccac 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 25328189 - 25328061
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactg-ggggagctcggggg 254  Q
    ||||||||||| || ||||||||||||||||||||| || | ||||||||||||  ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  25328189 gttgctgctttttgtgcaaacggaccggctgcctcgttcgtgcccttcgtcgaaggggggctctggtaccactgttgggtcactgaggggagctc-gggg 25328091  T
Q  255 gaccgcccacatcgaggctagaacaaccac 284  Q
    ||||| |||||| |||||||||||||||||    
T  25328090 gaccgtccacattgaggctagaacaaccac 25328061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 104 - 282
Target Start/End: Complemental strand, 624121 - 623946
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| ||| |||||||||||| || ||||  | ||| |||| || |||||| |||| ||||||||||||||| ||||| || || |||||||    
T  624121 gtatcgccgttgctgggttctccgcaaacggaccgacactactt-gtaccgtcgttgcttctttctgcgcaaacggaccgactgccacggtcgtaccctt 624023  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    | |||||  ||||||||||||||||||||||||||| | ||||||| ||||||||| | |||| |||||||||||||||    
T  624022 cttcgaacagggctctgataccactgttgggtcact-gaggagctc-gggggaccgtctacattgaggctagaacaacc 623946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 13415995 - 13416136
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    ||||||| ||||||||||||||||||||| || |||   ||||| | || |  ||||||||||| |||||||||||||||| ||||||| || |||||||    
T  13415995 gtatcgctgttgatggtttctccgcaaacggaccgagactgctt-gcaccgccgttgctgctttctgcgcaaacggaccggttgcctcggtcgtaccctt 13416093  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactgggggag 246  Q
    || |||| ||| |||||||||||||||||||||||| ||||||    
T  13416094 cgacgaacgggactctgataccactgttgggtcactaggggag 13416136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 26075064 - 26075193
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcac--tgggggagctcggggg 254  Q
    ||||||||||| ||||||||| |||||||||||||| || |||||||||||||| | |||||||||||||||||||| || |  | ||||||||  ||||    
T  26075064 gttgctgctttctgcgcaaacagaccggctgcctcggtcgtacccttcgtcgaacgaggctctgataccactgttggatcgctttaggggagcttagggg 26075163  T
Q  255 gaccgcccacatcgaggctagaacaaccac 284  Q
    ||  | |||||||||||||| |||||||||    
T  26075164 gatagtccacatcgaggctaaaacaaccac 26075193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 299722 - 299617
Alignment:
Q  178 ggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgtt-gggtcactgggggagctcggggggaccgcccacatcgaggctaga 276  Q
    ||||||||||||| ||||  ||||||||||||| | |||||||||||||||||| ||||||   ||||||||| ||||||| | ||||||||| ||||||    
T  299722 ggaccggctgccttgatcgcacccttcgtcgaacgaggctctgataccactgttggggtcatgaggggagctccgggggactgtccacatcgatgctaga 299623  T
Q  277 acaacc 282  Q
    ||||||    
T  299622 acaacc 299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 35150651 - 35150515
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggct----gcctcgatcttac 199  Q
    ||||| |||||| ||| |||||||||||| || ||||  ||||| || | || ||||||||||| ||||||||| ||||||||    |||||| || |||    
T  35150651 gtatcaccgttgctgggttctccgcaaacggaccgacactgctt-gttccgtcgttgctgctttctgcgcaaacagaccggctacctgcctcggtcatac 35150553  T
Q  200 ccttcgtcgaatggggctctgataccactgttgggtca 237  Q
    |||||||| || ||||||||||||||||||||||||||    
T  35150552 ccttcgtcaaacggggctctgataccactgttgggtca 35150515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 9498583 - 9498679
Alignment:
Q  179 gaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctaga 276  Q
    |||||||||||||| || ||||||| |||||| |||||||||||||| |  |||||||||  ||||||||  ||||||||| |||||| |||||||||    
T  9498583 gaccggctgcctcggtcgtaccctttgtcgaacggggctctgataccgcacttgggtcacgaggggagct-agggggaccgtccacattgaggctaga 9498679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 32487605 - 32487519
Alignment:
Q  198 acccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||| |||||||||||||||  |||||||||  |||| |||| ||||| |||  ||||||||||||||||||||||||    
T  32487605 acccttcgtcgaatcggggctctgataccagagttgggtcatgggggaagcttggggg-accatccacatcgaggctagaacaaccac 32487519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 24489489 - 24489565
Alignment:
Q  162 tgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtca 237  Q
    ||||||||||||||| |||| |||| ||||| || |||||||||||| || |||| |||||||||||||||| ||||    
T  24489489 tgctttatgcgcaaatggactggctacctcggtcgtacccttcgtcggatcggggttctgataccactgttgagtca 24489565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 6224442 - 6224324
Alignment:
Q  163 gctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgccc 262  Q
    ||||| ||||||||||||||| |||||||  || ||||||||||||||  ||||||||||||  |||| ||  |||  ||||||| | ||||||||| ||    
T  6224442 gctttttgcgcaaacggaccgactgcctcagtcgtacccttcgtcgaaccgggctctgatactgctgtaggaacacgaggggagc-ctgggggaccgtcc 6224344  T
Q  263 acatcgaggctagaacaacc 282  Q
    | || ||||||||| |||||    
T  6224343 atattgaggctagaccaacc 6224324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 6500644 - 6500578
Alignment:
Q  216 ctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||||||||||| | || ||||||| | ||||||||| ||||||||||||||||||||||    
T  6500644 ctctgataccactgttgggtaagtgaggggagc-ctgggggaccgtccacatcgaggctagaacaacc 6500578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 38427473 - 38427347
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgg-gggagctcggggg 254  Q
    ||||||| ||| ||||||||| ||| ||||| || | ||  |||||||||||||  |||||||| ||||||||||||| |||  |  |||||||||||||    
T  38427473 gttgctggtttctgcgcaaacagactggctgtcttggtcacacccttcgtcgaaccggggctctaataccactgttggatcatcgaagggagctcggggg 38427374  T
Q  255 gaccgcccacatcgaggctagaacaacc 282  Q
     |||||| ||||||||| ||||||||||    
T  38427373 -accgccaacatcgaggttagaacaacc 38427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 42405574 - 42405628
Alignment:
Q  228 tgttgggtcactggggg-agctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  42405574 tgttgggtcactggggggagctcggggg-accgtccacatcgaggctagaacaacc 42405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 3295259 - 3295312
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa 210  Q
    ||||||||||| ||||||||||||||| |||||||| || |||||||| |||||    
T  3295259 gttgctgctttctgcgcaaacggaccgactgcctcggtcgtacccttcatcgaa 3295312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 624379 - 624324
Alignment:
Q  227 ctgttgggtcact-gggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||||| ||||||||||||||  |||| ||||||||||||||||||||||    
T  624379 ctgttgggtcactagggggagctcgggga-accgtccacatcgaggctagaacaacc 624324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 1028492 - 1028547
Alignment:
Q  227 ctgttgggtcactg-ggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||    
T  1028492 ctgttgggtcactgaggggagctaggggg-accgtccacatcgaggctagaacaacc 1028547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 282
Target Start/End: Original strand, 12662556 - 12662682
Alignment:
Q  159 tgctgctttatgcgcaaacggaccggct-gcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactggggga--gctcg-gggg 254  Q
    ||||||||| || |||||||||||| || || |||||| || | ||||||||||||| |||||||||||  ||||||||| || ||||  |  || ||||    
T  12662556 tgctgctttttgtgcaaacggaccgacttgcttcgatcgtatctttcgtcgaatgggactctgataccagagttgggtca-tgagggagggaacgagggg 12662654  T
Q  255 gaccgcccacatcgaggctagaacaacc 282  Q
    ||||| ||||||||||||||||| ||||    
T  12662655 gaccgaccacatcgaggctagaagaacc 12662682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 24489245 - 24489280
Alignment:
Q  17 aaaagagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||||||| |||||||||||||    
T  24489245 aaaagagacgccacactcttacgcaaaatcttaagg 24489280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 26074533 - 26074395
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||| ||| ||| ||| |||| |||||||||| |||| |||||| | || |  ||||||||||| ||||||||| |||  |||| |||| || |||||||    
T  26074533 gtattgccattgttgggttcttcgcaaacagaccgacattgctt-gcaccgccgttgctgctttctgcgcaaacagactagctgtctcggtcgtaccctt 26074435  T
Q  204 cgtcgaat-ggggctctgataccactgttgggtcactggg 242  Q
     ||| ||  ||||||||||| ||| |||||||||||||||    
T  26074434 tgtcaaaccggggctctgatgccattgttgggtcactggg 26074395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 15370270 - 15370229
Alignment:
Q  238 ctgggggagctcggggggaccgcccacatcgaggctagaacaa 280  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  15370270 ctgggggagctcggggg-accgtccacatcgaggctagaacaa 15370229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 15370332 - 15370274
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatgggg 215  Q
    |||||| |||| ||||||||||||||||| |||||| || ||||||| |||||| ||||    
T  15370332 gttgctactttctgcgcaaacggaccggcagcctcggtcgtaccctttgtcgaacgggg 15370274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 3295344 - 3295377
Alignment:
Q  251 gggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||| ||||||||||||||||||||||||    
T  3295344 gggggaccgtccacatcgaggctagaacaaccac 3295377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 13415802 - 13415835
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggt 53  Q
    ||||||||||||||||||||||||| ||||||||    
T  13415802 agagacgccacactcttacccaaaaccttaaggt 13415835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 38427335 - 38427306
Alignment:
Q  20 agagacgccacactcttacccaaaatctta 49  Q
    ||||||||||||||||||||||||||||||    
T  38427335 agagacgccacactcttacccaaaatctta 38427306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 1028559 - 1028595
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttat 56  Q
    |||||||||||||||||||| |||| |||||||||||    
T  1028559 agagacgccacactcttaccaaaaaccttaaggttat 1028595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 9498696 - 9498728
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  9498696 agagacaccacactcttacccaaaatcttaagg 9498728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 34753067 - 34753099
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  34753067 agagacgccacactcttacccaaaaccttaagg 34753099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 284
Target Start/End: Complemental strand, 45754999 - 45754841
Alignment:
Q  124 tccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgata 223  Q
    |||||||||||| ||||  |||||||||| ||  |||||||||| ||  ||||||||| |||||||||| || ||||||||| |||| ||||||||||||    
T  45754999 tccgcaaacagaccgacactgctttgtaccgtctttgctgctttctgtacaaacggactggctgcctcggtcatacccttcgccgaacggggctctgata 45754900  T
Q  224 ccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||| |||||||||||| | | |||||  ||||||||||| ||||||||||    
T  45754899 ccactgttgggtcattgggggagctcgagtg-accgct-acatcgaggcttgaacaaccac 45754841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 284
Target Start/End: Complemental strand, 47129391 - 47129221
Alignment:
Q  111 cgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaa 210  Q
    ||||| |||||||||||||||| || ||||  ||||| | || |  |||| |||||| | |||||||||||||||||||||||||  ||| ||| |||||    
T  47129391 cgttgctggtttctccgcaaacggaccgacactgctt-gcaccgccgttgttgctttctacgcaaacggaccggctgcctcgatcgcaccattcatcgaa 47129293  T
Q  211 tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
     |||||||||||||||||||||| |||   |||||||||  |||||||| | |||| |||||||||||||||||    
T  47129292 cggggctctgataccactgttggatcatgaggggagctc--ggggaccgtctacattgaggctagaacaaccac 47129221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 48243313 - 48243435
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| |||||||||||| |||  | ||||  |||||||||| |  ||||||||||| |||||||||||||||||||||||| || |||||||    
T  48243313 gtatcgccgttgctggtttctccgccaacgaaccgacactgctttgtaccgccgttgctgctttctgcgcaaacggaccggctgcctcggtcgtaccctt 48243412  T
Q  204 cgtcgaatggggctctgatacca 226  Q
    ||||||||  | |||||||||||    
T  48243413 cgtcgaatcagactctgatacca 48243435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 1085528 - 1085648
Alignment:
Q  164 ctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgccc 262  Q
    |||| |||||||| ||||||||||||||| || |||||||| |||||  |||||| |||||||||||||||||||   ||||||| | ||||||||| ||    
T  1085528 ctttctgcgcaaatggaccggctgcctcggtcatacccttcatcgaaccggggctatgataccactgttgggtcatgaggggagc-cagggggaccgtcc 1085626  T
Q  263 acatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||    
T  1085627 acatcgaggctagaacaaccac 1085648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 37533260 - 37533394
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggga 245  Q
    |||||| || ||||||||||| | ||||| | ||||||| |||||| ||  |||||||||||||  |||||||||||||||||||||||||||  |||||    
T  37533260 ttgtaccgtcgttgctgctttctacgcaa-ctgaccggcggcctcggtcgcacccttcgtcgaaccggggctctgataccactgttgggtcacgagggga 37533358  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    || | ||||||||| ||||||||||||||||||||||    
T  37533359 gcgc-gggggaccgtccacatcgaggctagaacaacc 37533394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 30245408 - 30245281
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttaccc-ttcgtcgaatggggctctgataccactgttgggtcactgggggagctcgggggg 255  Q
    ||||||||| | |||||||||||| |||||||||||||| ||||| || |||||  ||||||||||||||||||||||||||   |||||||   |||||    
T  30245408 gttgctgctctctgcgcaaacggatcggctgcctcgatcgtacccttttgtcgagcggggctctgataccactgttgggtcataaggggagc-atggggg 30245310  T
Q  256 accgcccacatcgaggctagaacaaccac 284  Q
    |||| |||||| |||||| ||||||||||    
T  30245309 accgtccacattgaggcttgaacaaccac 30245281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 40094673 - 40094752
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtc 236  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||| ||||    
T  40094673 gttgctactttctgcgcaaacggaccggctgcctcggtcgtacccttcgtcgaacagggctctgataccactgttaggtc 40094752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 37532907 - 37533039
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactggggga 245  Q
    |||||| || ||||||||||| ||||||| | ||||||| |||||| ||  |||||||||||||  |||||||||||||||||||||||||||   ||||    
T  37532907 ttgtacagtcgttgctgctttctgcgcaa-ctgaccggcggcctcggtcgcacccttcgtcgaaccggggctctgataccactgttgggtcacgatggga 37533005  T
Q  246 gctcggggggaccgcccacatcgaggctagaacaa 280  Q
    || | ||||||||| ||||||||||| ||||||||    
T  37533006 gcgc-gggggaccgtccacatcgaggttagaacaa 37533039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 284
Target Start/End: Complemental strand, 30244606 - 30244478
Alignment:
Q  156 tgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccc-ttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggg 254  Q
    |||||||||| | ||||||||||||||| ||||||||||| ||||| || ||| || |||||| |||||||| ||||||||||   ||||||| | | ||    
T  30244606 tgttgctgctctctgcgcaaacggaccgactgcctcgatcgtacccttttgtcaaacggggctttgataccattgttgggtcatgaggggagc-ctgagg 30244508  T
Q  255 gaccgcccacatcgaggctagaacaaccac 284  Q
    ||||| ||||||||||||| ||||||||||    
T  30244507 gaccgtccacatcgaggcttgaacaaccac 30244478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 45434558 - 45434427
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| | ||||||||||||||||| ||||  | ||| |||  || |||||||||||||||| |||||||| |||| ||||| || |||||||    
T  45434558 gtatcgccgttgctagtttctccgcaaacagaccgacactactt-gtatcgtcgttgctgctttatgcggaaacggactggctacctcg-tcgtaccctt 45434461  T
Q  204 cgtcgaatggggctctgataccactgttgggtca 237  Q
     ||||||  |||||| ||||||||||||||||||    
T  45434460 tgtcgaaccgggctccgataccactgttgggtca 45434427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 30253823 - 30253696
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttc-gtcgaatggggctctgataccactgttgggtcactgggggagctcgggggg 255  Q
    ||||||||| | ||| |||||||| ||||||||| |||| |||||||  |||||| ||||||||||||||| ||||||||||   ||||||| | |||||    
T  30253823 gttgctgctctctgcacaaacggatcggctgccttgatcgtacccttttgtcgaacggggctctgataccattgttgggtcatgaggggagc-ctggggg 30253725  T
Q  256 accgcccacatcgaggctagaacaaccac 284  Q
    || | ||||||||||||| ||||||||||    
T  30253724 acagtccacatcgaggcttgaacaaccac 30253696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 45433491 - 45433369
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactg-ggggagctcgggggg 255  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||| ||||||  ||||||||||   ||||  ||||||  | ||||||| | |||||    
T  45433491 gttgctgctttatgcgcaaacggaccagctgcctcggtcgtaccctttgtcgaaccgggctctgat---actgcagggtcatagaggggagc-caggggg 45433396  T
Q  256 accgcccacatcgaggctagaacaacc 282  Q
    |||| ||||||||||||||||||||||    
T  45433395 accgaccacatcgaggctagaacaacc 45433369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 28300474 - 28300559
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgg 233  Q
    |||||| || ||||||||||| |||||||  |||||| |||||||| || |||||||||||||||  ||||||||||||| ||||||    
T  28300474 ttgtaccgtcgttgctgctttctgcgcaat-ggaccgactgcctcggtcgtacccttcgtcgaatcaggctctgataccagtgttgg 28300559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 7553894 - 7553826
Alignment:
Q  158 ttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgatacca 226  Q
    |||||||||| ||||||||||||||| ||||||| |||  ||||||| ||||| |||||||| ||||||    
T  7553894 ttgctgctttctgcgcaaacggaccgactgcctcaatcgcacccttcatcgaacggggctctaatacca 7553826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 11845373 - 11845320
Alignment:
Q  227 ctgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaac 281  Q
    ||||||||||||||||||||| | ||||||||| | |||||||||||||||||||    
T  11845373 ctgttgggtcactgggggagcac-gggggaccgtctacatcgaggctagaacaac 11845320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 28300295 - 28300327
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||||||||||||||||||    
T  28300295 agagacgccacactcttacccaaaatcttaagg 28300327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 6054745 - 6054687
Alignment:
Q  224 ccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacca 283  Q
    |||||||||||||| | || ||||||||||| |||| ||||||| |||||||||||||||    
T  6054745 ccactgttgggtcagtcggagagctcggggg-accgtccacatcaaggctagaacaacca 6054687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 8128363 - 8128473
Alignment:
Q  175 aacggaccggctgcctcgatcttacccttcgtcgaa-tggggctctgataccactgttgggtcactg-ggggagctcggggggaccgcccacatcgaggc 272  Q
    |||||| ||||||| |||||| ||||||||||||||   ||||| ||||||||||||||||| | || |||||| |  ||||||| |  |||||||| ||    
T  8128363 aacggaacggctgcttcgatcgtacccttcgtcgaaccagggctttgataccactgttgggttagtgaggggag-tgcgggggactgttcacatcgatgc 8128461  T
Q  273 tagaacaaccac 284  Q
    ||||||||||||    
T  8128462 tagaacaaccac 8128473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 30245255 - 30245199
Alignment:
Q  227 ctgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||  |||||||||||||| |||  ||||||||||||| ||||||||||    
T  30245255 ctgttgggtcacgaggggagctcggggg-accatccacatcgaggcttgaacaaccac 30245199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 45754831 - 45754782
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatgggattttgagtc 69  Q
    |||||| |||||||||||||||||| ||||||| |||||| || ||||||    
T  45754831 agagacaccacactcttacccaaaaccttaaggctatgggtttatgagtc 45754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 1085658 - 1085690
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  1085658 agagacgccacactcttacccaaaaccttaagg 1085690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 7517738 - 7517706
Alignment:
Q  252 ggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||| |||||||||||||||||||||||||    
T  7517738 ggggaccacccacatcgaggctagaacaaccac 7517706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 37533402 - 37533438
Alignment:
Q  16 caaaagagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||| |||||||||||||||||| |||||||    
T  37533402 caaaagagacaccacactcttacccaaaaccttaagg 37533438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 45433357 - 45433325
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  45433357 agagacaccacactcttacccaaaatcttaagg 45433325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 284
Target Start/End: Complemental strand, 40734231 - 40734008
Alignment:
Q  64 tgagtccatcaattcatcatgctc-ccattcaagcgaaagcg--tatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttg 160  Q
    ||||||||||||||||||||| || || |||||||| ||||   ||||| ||||| ||| |||||||||||| || | ||  ||||| |||| |||||||    
T  40734231 tgagtccatcaattcatcatgttctcccttcaagcggaagctcttatcgtcgttgttgggttctccgcaaacggaccaacagtgctt-gtaccgttgttg 40734133  T
Q  161 ctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactg--ggggagctcggggggacc 258  Q
    ||||||| |||||||||| ||||||||||||| || ||||||| | |||| |||||||||||||||||| ||| ||||||  ||||||    ||||||||    
T  40734132 ctgctttctgcgcaaacgaaccggctgcctcggtcgtaccctttgacgaacggggctctgataccactg-tggttcactgaaggggagtcaagggggacc 40734034  T
Q  259 gcccacatcgaggctagaacaaccac 284  Q
    | |||||||||| || ||||||||||    
T  40734033 gtccacatcgagacttgaacaaccac 40734008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 3672951 - 3672827
Alignment:
Q  160 gctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcact-gggggagctcggggggacc 258  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||  ||||||||||| |||||||| | |||| |||    
T  3672951 gctgctttctgcgcaaacggaccggctgcctcgatcacacccttcgtcgaacggggctctgataacagcgttgggtcactagggggagc-caggggaacc 3672853  T
Q  259 gcccacatcgaggctagaacaaccac 284  Q
    | |||||||||| |||||||||||||    
T  3672852 gtccacatcgagactagaacaaccac 3672827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 282
Target Start/End: Complemental strand, 23346540 - 23346364
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccctt 203  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||| ||||||   ||| |||||| |||||| || |||||||| ||||| || ||||||     
T  23346540 gtatcgccgttgctggtttctccgcaaacagaccgacactgctt-gtactgccattgttgctttctgcgcagacagaccggctacctcggtcgtacccta 23346442  T
Q  204 cgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||| ||  |||||||||||||| ||||||||||   ||||||||| ||| ||||| ||||||| ||||||||||||||    
T  23346441 cgtcaaaccgggctctgataccattgttgggtcatgaggggagctc-gggcgaccgtccacatctaggctagaacaacc 23346364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 42514861 - 42514777
Alignment:
Q  197 tacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||||||||  ||||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||||||||||    
T  42514861 tacccttcgtcgaacagggctctgataccactgttgggtcacgaggggagctcg-ggggaccgtccacatcgaggctagaacaacc 42514777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 6421646 - 6421513
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggag 246  Q
    ||||||||| ||||||||||| ||| ||||| ||| | || ||||  || ||||||| |||||| || ||||||||||||||||||||||||  ||||||    
T  6421646 ttgtactgtcgttgctgctttctgcacaaacagacag-ctccctcagtcgtaccctttgtcgaacggtgctctgataccactgttgggtcacgaggggag 6421548  T
Q  247 ctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||| |||||||| |||||||||| |||||||||||    
T  6421547 ctcg-ggggaccgtccacatcgagactagaacaacc 6421513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 36785798 - 36785928
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctg-cctcgatcttaccct 202  Q
    |||||| ||||| ||||||||| |||||| ||||||   ||||| |||| |  |||||||||||||| ||||||||| || ||| |||||||| ||||||    
T  36785798 gtatcgtcgttgctggtttctctgcaaacggatcgatactgctt-gtaccgccgttgctgctttatgtgcaaacggatcgtctggcctcgatcgtaccct 36785896  T
Q  203 tcgtcgaatggggctctgataccactgttggg 234  Q
    |||||||| |||||||||||||||||||||||    
T  36785897 tcgtcgaacggggctctgataccactgttggg 36785928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 37106136 - 37106052
Alignment:
Q  198 acccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||||||||||  |||||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||||||||||    
T  37106136 acccttcgtcgaaccggggctctgataccactgttgggtcacaaggggagctcg-ggggaccgtccacatcgaggctagaacaacc 37106052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 35580659 - 35580754
Alignment:
Q  187 gcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    |||||| || ||||||||||||||  ||||||||||||||| | |||||||| |||||||| || ||||||||| ||||||||||||||||||||||    
T  35580659 gcctcggtcatacccttcgtcgaaccggggctctgataccattattgggtcattgggggag-tcagggggaccgtccacatcgaggctagaacaacc 35580754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 962844 - 962724
Alignment:
Q  162 tgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcggggggaccgcc 261  Q
    ||||||||| ||||||||||||||| ||||  ||  ||||||| |||||  ||||||| |||| |||||||| ||| |||||||| || ||| ||||| |    
T  962844 tgctttatgtgcaaacggaccggctacctcagtcgcacccttcatcgaaccgggctctaatactactgttggatca-tgggggagttc-gggagaccgtc 962747  T
Q  262 cacatcgaggctagaacaaccac 284  Q
    |||||||||||||||||||||||    
T  962746 cacatcgaggctagaacaaccac 962724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 14745627 - 14745699
Alignment:
Q  212 ggggctctgataccactgttgggtcac-tgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||| | ||||||||||||||||||||||||    
T  14745627 ggggctctgataccactgttgggtcacgagggggagctc-gggggactgtccacatcgaggctagaacaaccac 14745699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 282
Target Start/End: Complemental strand, 7598533 - 7598356
Alignment:
Q  104 gtatcgccgttgatggtttctccgcaaacagatc-gacgttgctttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttaccct 202  Q
    |||||| ||||| ||||||||||| ||||||| | |||  ||| |||||| || ||||||||||| ||||| |||||||||||| ||||  || ||||||    
T  7598533 gtatcgtcgttgttggtttctccgtaaacagacctgacactgc-ttgtaccgtcgttgctgctttctgcgc-aacggaccggctacctcagtcgtaccct 7598436  T
Q  203 tcgtcgaa-tggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacc 282  Q
    ||||||||   ||||| |||||||| |||||||||||  |||||| ||  ||||||||  |||||||||||| ||||||||    
T  7598435 tcgtcgaacctgggctttgataccagtgttgggtcacgaggggagatc-aggggaccgttcacatcgaggcttgaacaacc 7598356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 40679895 - 40679993
Alignment:
Q  148 tgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggag 246  Q
    |||||||  ||||||||||| |||||| ||||||||||| | ||| || |||| |||||| |||||| |||||||| |||||||| |||||||| ||||    
T  40679895 tgtactgccgttgctgctttctgcgcatacggaccggctacttcggtcgtaccattcgtcaaatgggactctgatatcactgttgagtcactggcggag 40679993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 3673249 - 3673194
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||    
T  3673249 tgttgggtcactgggggagc-cagggggaccgtccacatcgaggctagaacaaccac 3673194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 38796578 - 38796650
Alignment:
Q  213 gggctctgataccactgttgggtcactgggggag-ctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    ||||||||||||||||||||||||| |||||||| || || ||||||| | ||||||||||| ||||||||||    
T  38796578 gggctctgataccactgttgggtcattgggggagccttggagggaccgtcgacatcgaggcttgaacaaccac 38796650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 29676790 - 29676694
Alignment:
Q  147 ttgtactgttgttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaat-ggggctctgataccactgttgggtcactgggg 243  Q
    ||||||||| |||| |||||| ||||||| | || |||| |||||  || |||||||||| |||  ||||||||||||||||||||||||||||||||    
T  29676790 ttgtactgtcgttgttgctttctgcgcaa-ctgatcggcggcctcagtcatacccttcgttgaaccggggctctgataccactgttgggtcactgggg 29676694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 40733858 - 40733698
Alignment:
Q  64 tgagtccatcaattcatcatgctccca-ttcaagcgaaagcg--tatcgccgttgatggtttctccgcaaacagatcgacgttgctttgtactgttgttg 160  Q
    ||||||||||||||||||||||||||  |||||||| ||||   ||||||||||| ||| |||  ||||||| || | ||  ||||| ||||||| ||||    
T  40733858 tgagtccatcaattcatcatgctcccccttcaagcggaagctcttatcgccgttgctgggttcatcgcaaacggaccaacactgctt-gtactgtcgttg 40733760  T
Q  161 ctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgt 230  Q
    ||||||        |||| ||||||||||||| || ||||||| |||||| |||||| ||||||||||||    
T  40733759 ctgctt--------aacgaaccggctgcctcggtcgtaccctttgtcgaacggggctttgataccactgt 40733698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 6421956 - 6421857
Alignment:
Q  185 ctgcctcgatcttacccttcgtcgaatgg-ggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaacca 283  Q
    |||||||| || ||||||| ||||||  | |||||| ||||||| |||||||||   |||||||||||||| |||| |||||||||||| ||||||||||    
T  6421956 ctgcctcggtcgtaccctttgtcgaaccgaggctctaataccaccgttgggtcatgaggggagctcggggg-accgtccacatcgaggccagaacaacca 6421858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 36178552 - 36178637
Alignment:
Q  198 acccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||  ||||||||||||||||| ||||||||| | |||||| | |||||| || |||||| |||||||||||||||||    
T  36178552 acccttcgtcgaaccggggctctgataccactattgggtcac-gagggagcgc-gggggatcgtccacatagaggctagaacaaccac 36178637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 5367571 - 5367534
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaaggttatg 57  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  5367571 agagacgccacactcttacccaaaaccttaaggttatg 5367534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 30313293 - 30313261
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||||||||||||||||||    
T  30313293 agagacgccacactcttacccaaaatcttaagg 30313261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 40679671 - 40679703
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||||||||||||||||||    
T  40679671 agagacgccacactcttacccaaaatcttaagg 40679703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 42514765 - 42514733
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||||||||||||||||||||||||||||||    
T  42514765 agagacgccacactcttacccaaaatcttaagg 42514733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 15511471 - 15511527
Alignment:
Q  226 actgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||| |||||||||||||||  ||||| || |||||||||| |||||||||||||    
T  15511471 actgttggttcactgggggagctc--ggggatcgtccacatcgagactagaacaaccac 15511527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 38796463 - 38796530
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgatac 224  Q
    ||||||| ||| | ||||||||||| |||||||| | || ||||||||||| || |||||||||||||    
T  38796463 gttgctggtttctccgcaaacggactggctgcctaggtcgtacccttcgtcaaacggggctctgatac 38796530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 30312983 - 30312945
Alignment:
Q  216 ctctgataccactgttgggtcactgggggagctcggggg 254  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  30312983 ctctgataccactgttgggtcacgaggggagctcggggg 30312945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 3672817 - 3672785
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  3672817 agagacaccacactcttacccaaaatcttaagg 3672785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 5543040 - 5543072
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  5543040 agagacaccacactcttacccaaaatcttaagg 5543072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 14745336 - 14745368
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  14745336 agagacgccacactcttacccaaaaccttaagg 14745368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 14745709 - 14745741
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  14745709 agagacgccacactcttacccaaaaccttaagg 14745741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 15880379 - 15880347
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  15880379 agagacgccacactcttacccaaaaccttaagg 15880347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 30323580 - 30323548
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||| |||||||    
T  30323580 agagacgccacactcttacccaaaaccttaagg 30323548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 33954304 - 33954336
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    ||||||||||||||||||||||||||| |||||    
T  33954304 agagacgccacactcttacccaaaatcgtaagg 33954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 37106040 - 37106008
Alignment:
Q  20 agagacgccacactcttacccaaaatcttaagg 52  Q
    |||||| ||||||||||||||||||||||||||    
T  37106040 agagacaccacactcttacccaaaatcttaagg 37106008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 460 - 546
Alignment:
Q  198 acccttcgtcgaat-ggggctctgataccactgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||||||||| ||||||    
T  460 acccttcgtcgaaccggggctctgataccactgttgggtcactggggaagctc-gggggaccttccacatcgaggctagaaaaaccac 546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 124 - 179
Alignment:
Q  228 tgttgggtcactgggggagctcggggggaccgcccacatcgaggctagaacaaccac 284  Q
    |||||||||||| | | |||||||||| |||| ||||||||||||||||||||||||    
T  124 tgttgggtcactagagaagctcggggg-accgtccacatcgaggctagaacaaccac 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 5647 - 5525
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcactgggggagctcgggggga 256  Q
    ||||||||||| ||||||||||||||| |||||| ||||  |||||||||||||   ||||||||||||||| ||||||||||| |||||||   ||||     
T  5647 gttgctgctttctgcgcaaacggaccgactgcctggatcacacccttcgtcgaa-caggctctgataccactattgggtcactgagggagct-ttggggt 5550  T
Q  257 ccgcccacatcgaggctagaacaacc 282  Q
    ||| ||||||||||||| ||||||||    
T  5549 ccg-ccacatcgaggcttgaacaacc 5525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 5233 - 5153
Alignment:
Q  157 gttgctgctttatgcgcaaacggaccggctgcctcgatcttacccttcgtcgaatggggctctgataccactgttgggtcact 239  Q
    ||||||||||| |||||||   |||| |||||||||||| |||| ||||||||| |||||| |||| ||||||||||||||||    
T  5233 gttgctgctttctgcgcaac--gaccagctgcctcgatcgtacctttcgtcgaacggggctgtgatgccactgttgggtcact 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 39649 - 39616
Alignment:
Q  214 ggctctgataccactgttgggtcactgggggagc 247  Q
    |||||||||||||||||||||||||| |||||||    
T  39649 ggctctgataccactgttgggtcactaggggagc 39616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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