View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17133_low_24 (Length: 262)
Name: NF17133_low_24
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 3186506 - 3186308
Alignment:
| Q |
11 |
cagagaccacaactcttggatttacttgagcttgacatctcaaactcaacgattttcgagatgaacttgaaacacgacccctgttacacagggtacccca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3186506 |
cagaaaccacaactcttggatttacttgagcttgacatctcaaactcaacgattttcgagatgaacttgaaacacgacccctgttacaaagggtacccca |
3186407 |
T |
|
| Q |
111 |
aagcaattgacttgtaggtttctgaggtttctttagcaaaaacaatgtttgtctgcatgtaccctgtaaccaaaatcataaaccccatcaacacaattg |
209 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3186406 |
aagcaattgacttgtaggtttatgaggtttctttagaaaaaacaatgtttgtctgcatgtaccctgtaaccaaaatcataaaccccatcaacacaattg |
3186308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 42391651 - 42391841
Alignment:
| Q |
11 |
cagagaccacaactcttggatttacttgagcttgacatctcaaactcaacgattttcgagatgaacttgaaacacgacccctgttacacagggtacccca |
110 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42391651 |
cagaaaccacaactcttggattttcttgagcttgacatctcaaactcaacgattttcgagatgaacttgaaacacgacccctgttacaaagggtacccca |
42391750 |
T |
|
| Q |
111 |
aagcaattgacttgtaggtttctgaggtttctttagcaaaaacaatgtttgtctgcatgtaccctgtaaccaaaatcataaaccccatcaa |
201 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
42391751 |
aagcaattgacttgtagatttctgaggtttttttagcaaaaacaatgtttgtctgcatgtaccctgtaaacaaaatcataaaccccgtcaa |
42391841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 38411221 - 38411419
Alignment:
| Q |
11 |
cagagaccacaactcttggatttacttgagcttgacatctcaaactcaacgattttcgagatgaacttgaaacacgacccctgttacacagggtacccca |
110 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||||||||||| ||| |||||| ||| |||||| |||||| ||||| ||||| ||||||||||| |
|
|
| T |
38411221 |
cagaaaccacaactcttggactttgttgagcttgacatctcaaacgcaatgattttggagttgaactcagaacacggcccctattacaaagggtacccca |
38411320 |
T |
|
| Q |
111 |
aagcaattgacttgtaggtttctgaggtttctttagcaaaaacaatgtttgtctgcatgtaccctgtaaccaaaatcataaaccccatcaacacaattg |
209 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||| | |||||||||| |
|
|
| T |
38411321 |
aagcaattgacgtgtctgtttatgaggcttctttaccaaaaacaatgtttgcctgcatgtaccctgaaaccaaaatcacaaaccccgtaaacacaattg |
38411419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University