View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_27 (Length: 249)
Name: NF17133_low_27
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_27 |
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| [»] scaffold0020 (2 HSPs) |
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Alignment Details
Target: scaffold0020 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 3079 - 2842
Alignment:
| Q |
14 |
actagatctatggttgcaagaaaaataaacataaaagctgcaattcatttcatactctgttcaagagagtctgttacaatatatagctaggtcaacacag |
113 |
Q |
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| T |
3079 |
actagatctatggttgcaagaaaaataaacataaaagctgcaattcatttcatactctgttctagagagtctgttacaatatatagctaggtcaacacag |
2980 |
T |
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| Q |
114 |
taatgggccataggcttattaattcaactactagatatataataaaaacaaggttgagcattaagggtac-cccctcttttac-tagtaacggtagtaat |
211 |
Q |
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| T |
2979 |
taatgggccctaggcttattaattcaactactagatatataataaaaacaaggttgagcactaagggtacccccctcttttacttagtaacggtagtaat |
2880 |
T |
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| Q |
212 |
cctttagccaagctggtgctttgttttcccttaggaat |
249 |
Q |
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| T |
2879 |
cctttagccaagctggtgctttgttttcccttaggaat |
2842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 8585 - 8348
Alignment:
| Q |
14 |
actagatctatggttgcaagaaaaataaacataaaagctgcaattcatttcatactctgttcaagagagtctgttacaatatatagctaggtcaacacag |
113 |
Q |
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| T |
8585 |
actagatctatggttgcaagaaaaataaacataaaagctgcaattcatttcatactctgttctagagagtctgttacaatatatagctaggtcaacacag |
8486 |
T |
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| Q |
114 |
taatgggccataggcttattaattcaactactagatatataataaaaacaaggttgagcattaagggtac-cccctcttttac-tagtaacggtagtaat |
211 |
Q |
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| T |
8485 |
taatgggccctaggcttattaattcaactactagatatataataaaaacaaggttgagcactaagggtacccccctcttttacttagtaacggtagtaat |
8386 |
T |
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| Q |
212 |
cctttagccaagctggtgctttgttttcccttaggaat |
249 |
Q |
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| T |
8385 |
cctttagccaagctggtgctttgtttttccttaggaat |
8348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 5574697 - 5574843
Alignment:
| Q |
101 |
taggtcaacacagtaatgggccataggcttattaattcaactactagatatataataaaaacaaggttgagcattaagggtaccccctcttttactagta |
200 |
Q |
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| T |
5574697 |
taggttaacacagtaaggggccatgggcctatcatttcaactactagacatataataaaaccaggattgagcactaaaggcaccccctcttttactagta |
5574796 |
T |
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| Q |
201 |
acggtagtaatcctttagccaagctggtgctttgttttcccttagga |
247 |
Q |
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| T |
5574797 |
acggtagtaatcctttaactaagctggtgctttgttttcccttagga |
5574843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 5574632 - 5574695
Alignment:
| Q |
18 |
gatctatggttgcaagaaaaataaacataaaagctgcaattcatttcatactctgttcaagagagt |
83 |
Q |
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| T |
5574632 |
gatctagggttgcaaggaaaataaacataaaa-ctgcaattca-ttcataacatgttcaagagagt |
5574695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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