View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_low_28 (Length: 249)

Name: NF17133_low_28
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17133_low_28
NF17133_low_28
[»] chr4 (3 HSPs)
chr4 (141-241)||(46994055-46994155)
chr4 (1-107)||(46994189-46994295)
chr4 (71-104)||(40308441-40308474)
[»] scaffold0760 (1 HSPs)
scaffold0760 (5-74)||(1630-1699)
[»] chr8 (4 HSPs)
chr8 (5-74)||(37269751-37269820)
chr8 (5-72)||(42941348-42941415)
chr8 (71-101)||(33656119-33656149)
chr8 (71-104)||(28732762-28732795)
[»] chr7 (1 HSPs)
chr7 (71-101)||(24249786-24249816)
[»] chr3 (1 HSPs)
chr3 (71-104)||(29222438-29222471)
[»] chr6 (1 HSPs)
chr6 (71-107)||(25166631-25166667)
[»] chr2 (1 HSPs)
chr2 (71-107)||(32498925-32498961)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 46994155 - 46994055
Alignment:
Q  141 attcgtttgcatgtattcaattatatctactgcaatttatggttgaatattgtactacaatttatggttgaacattgtatttaatcatccaccgttcatc 240  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46994155 attcgtttgcatgtattcaattatatctactacaatctatggttgaatattgtactacaatttatggttgaacattgtatttaatcatccaccgttcatc 46994056  T
Q  241 t 241  Q
    |    
T  46994055 t 46994055  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 46994295 - 46994189
Alignment:
Q  1 tttagctataggcatctgtcatgtctgttttcagctgttatggatgggattttttgcgcaacagttctgtttattataaaatgattgtataaatatcatt 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||  || || ||||||||||    
T  46994295 tttagctataggcatctgtcatgtctattttcagctgttatggatggagttttttgcgcagcagttctgtttattgtaaaatagttatacaaatatcatt 46994196  T
Q  101 tttcatt 107  Q
    |||||||    
T  46994195 tttcatt 46994189  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 40308474 - 40308441
Alignment:
Q  71 ttattataaaatgattgtataaatatcatttttc 104  Q
    ||||||||||||||||||| ||||||||||||||    
T  40308474 ttattataaaatgattgtacaaatatcatttttc 40308441  T

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Target: scaffold0760 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 1699 - 1630
Alignment:
Q  5 gctataggcatctgtcatgtctgttttcagctgttatggatgggattttttgcgcaacagttctgtttat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  1699 gctataggcatctgtcatgtctgttttcagctgttatggatggagttttttgcgcagcagttctgtttat 1630  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 37269820 - 37269751
Alignment:
Q  5 gctataggcatctgtcatgtctgttttcagctgttatggatgggattttttgcgcaacagttctgtttat 74  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  37269820 gctataggcatctgccatgtctgttttcagctgttatggatggggttttttgcgcagcagttctgtttat 37269751  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 42941348 - 42941415
Alignment:
Q  5 gctataggcatctgtcatgtctgttttcagctgttatggatgggattttttgcgcaacagttctgttt 72  Q
    |||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||||||||||    
T  42941348 gctataggcatctgtcatgtctgttttcagctgttacgtatggggtttttagcgcagcagttctgttt 42941415  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Complemental strand, 33656149 - 33656119
Alignment:
Q  71 ttattataaaatgattgtataaatatcattt 101  Q
    |||||||||||||||||||||||||||||||    
T  33656149 ttattataaaatgattgtataaatatcattt 33656119  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 28732795 - 28732762
Alignment:
Q  71 ttattataaaatgattgtataaatatcatttttc 104  Q
    |||| |||||||||||||||||||||||||||||    
T  28732795 ttatcataaaatgattgtataaatatcatttttc 28732762  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 24249786 - 24249816
Alignment:
Q  71 ttattataaaatgattgtataaatatcattt 101  Q
    |||||||||||||||||||||||||||||||    
T  24249786 ttattataaaatgattgtataaatatcattt 24249816  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 29222438 - 29222471
Alignment:
Q  71 ttattataaaatgattgtataaatatcatttttc 104  Q
    |||| |||||||||||||||||||||||||||||    
T  29222438 ttatcataaaatgattgtataaatatcatttttc 29222471  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 25166667 - 25166631
Alignment:
Q  71 ttattataaaatgattgtataaatatcatttttcatt 107  Q
    |||||||||| || |||||||||||||||||||||||    
T  25166667 ttattataaagtggttgtataaatatcatttttcatt 25166631  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 32498961 - 32498925
Alignment:
Q  71 ttattataaaatgattgtataaatatcatttttcatt 107  Q
    |||||| |||||||||||||||||||||||| |||||    
T  32498961 ttattagaaaatgattgtataaatatcatttctcatt 32498925  T

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