View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_29 (Length: 248)
Name: NF17133_low_29
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 24539887 - 24540104
Alignment:
| Q |
15 |
cagagaagagttttacagaaacacccttagacattgattgttttacaaacttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtac |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24539887 |
cagagaagagttttacataaacacccttagacattgatcgttttacaagcttaagaagagccccaataacaccaccatgaagatttgaaggttttagtac |
24539986 |
T |
|
| Q |
115 |
tttaggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24539987 |
tttaggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccaatataaaagtaacctttcttattcgtcttg |
24540086 |
T |
|
| Q |
215 |
gctttaaggaccaacttg |
232 |
Q |
| |
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|||||||||||||||||| |
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| T |
24540087 |
gctttaaggaccaacttg |
24540104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 20965135 - 20964923
Alignment:
| Q |
19 |
gaagagttttacagaaacacccttagacattgattgttttacaaacttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtacttta |
118 |
Q |
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||||||||||| ||||| |||||||||| |||| |||| || |||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
20965135 |
gaagagttttaaagaaatccccttagacactgatcgtttcactggcttaagaagagccccagtaagaccgccatgaagatttgaaggttttagtgctttt |
20965036 |
T |
|
| Q |
119 |
ggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggctt |
218 |
Q |
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| T |
20965035 |
ggtgaattatctaaaacaacgttgcaatggcgagttgaataacctacaatgttctttgggccaccaatatagaagtaacctttcttatcagtcttggctt |
20964936 |
T |
|
| Q |
219 |
taaggaccaactt |
231 |
Q |
| |
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||||||||||||| |
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| T |
20964935 |
taaggaccaactt |
20964923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 3174901 - 3175115
Alignment:
| Q |
21 |
agagttttacagaaacacccttagacattgattgttttacaaacttaagaagag---ccccagtaacaccaccatgaagatttgaaggttttagtacttt |
117 |
Q |
| |
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||||||||| ||| ||||||||||||| || | |||| || ||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||| |
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| T |
3174901 |
agagttttaaagagacacccttagacactggtcgtttcaccggcttaagaagaggcgccccactaagaccaccatgaagatttgagggttttagtacttt |
3175000 |
T |
|
| Q |
118 |
aggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggct |
217 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||||||| |
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| T |
3175001 |
tggtgcagtatctaaaacaacgttgcaatgacgagttgaataacctgcaatgttctttgggcctccaatatagaagtaacctttcttatcagtcttggct |
3175100 |
T |
|
| Q |
218 |
ttaaggaccaacttg |
232 |
Q |
| |
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||||||||||||||| |
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|
| T |
3175101 |
ttaaggaccaacttg |
3175115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 41522231 - 41522439
Alignment:
| Q |
21 |
agagttttacagaaacacccttagacattgattgttttacaaacttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtactttagg |
120 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||| | || | |
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| T |
41522231 |
agagttttaacgaaacactcttagacaccgattgtttcacaggcttaagaagagctccagtaaaaccaccatgaagatttgagggttttagtccatttga |
41522330 |
T |
|
| Q |
121 |
tgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctccagtataaaagtaacctttcttattcgtcttggcttta |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||| |||| |||||||| ||||||| |||||||||||| |
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| T |
41522331 |
tgcactatccaaaacaacgttgcaatggcgagttatgcaactcgtaatgttttttggggctccaatatagaagtaacccttcttatcagtcttggcttta |
41522430 |
T |
|
| Q |
221 |
aggaccaac |
229 |
Q |
| |
|
||||||||| |
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|
| T |
41522431 |
aggaccaac |
41522439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 14674235 - 14674382
Alignment:
| Q |
85 |
accaccatgaagatttgaaggttttagtactttaggtgcactatccaaaacaacgttgcaatggcgagttgaataacctgtaatgttctttggacctcca |
184 |
Q |
| |
|
|||||||||||||||||| ||||||||| | || |||||||| ||||||||||| |||||||||| | || ||| | | ||||||||||| || |||| |
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| T |
14674235 |
accaccatgaagatttgatggttttagtccatttggtgcactctccaaaacaacattgcaatggccggatgcatagctagaaatgttctttgaacttcca |
14674334 |
T |
|
| Q |
185 |
gtataaaagtaacctttcttattcgtcttggctttaaggaccaacttg |
232 |
Q |
| |
|
|||| | ||||||| |||||| || |||||||||||||| |||||| |
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|
| T |
14674335 |
atatagatataaccttccttattagttttggctttaaggacgaacttg |
14674382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 16603265 - 16603191
Alignment:
| Q |
64 |
cttaagaagagccccagtaacaccaccatgaagatttgaaggttttagtactttaggtgcactatccaaaacaac |
138 |
Q |
| |
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|||||||| ||| ||||| |||||||||||||||||||| || |||| | | || |||||||||||||| ||||| |
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| T |
16603265 |
cttaagaacagcaccagtgacaccaccatgaagatttgagggctttaatccatttggtgcactatccaatacaac |
16603191 |
T |
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