View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17133_low_30 (Length: 246)

Name: NF17133_low_30

Description: NF17133

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17133_low_30

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 94; E-Value: 5e-46

Query Start/End: Original strand, 102 - 228

Target Start/End: Complemental strand, 42669732 - 42669606

Alignment:

Q	102	tgtacaatattcattttcatatacctaagtttccagagtttttcttgtatatactaaatcaaccaaagnnnnnnnatttgatgtctggcttaaagaccga	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42669732	tgtacaatattcattttcatatacgtaagtttctagagtttttcttgtatatactacatcaaccaaagtttttttatttgatgtctggcttaaagaccga	42669633	T

Q	202	ctaattccatcgttcattagcgagggt	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42669632	ctaattccatcgttcattagcgagggt	42669606	T

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Target: chr2; HSP #2

Raw Score: 83; E-Value: 2e-39

Query Start/End: Original strand, 18 - 108

Target Start/End: Complemental strand, 42670004 - 42669914

Alignment:

Q	18	atgaattaagtggaaggtgtgtgttatatttaacagcaatatgattatatttagaacagagaacttgcaagatagcaaagaaattgtacaa	108	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	42670004	atgaattaagtggaaggtgtgtgttatatttaacagcaatatggttatatttagaacagagaacttgcaagatagcaaagaaactgtacaa	42669914	T

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