View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_36 (Length: 238)
Name: NF17133_low_36
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 33883190 - 33883366
Alignment:
| Q |
17 |
taggattgagtagctttgtttgtttattagtgatcactgattagaatttatctttttatctggttttatagtgaatggaacctatgattgagtacgtagt |
116 |
Q |
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| T |
33883190 |
taggattgagtagttttgttgatttattagtgatg--tgattagaatttatctttttagttggttttatagtgaatgaaacctatgattga----gtagt |
33883283 |
T |
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| Q |
117 |
tttgctgatttattagtgattagtggttaggattttatc-tttcagttggttttataatagatggaaaacaacaatgatttta |
198 |
Q |
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| T |
33883284 |
tttgctgatttatttgtgattagtggttaggattttatcttttcagttggttttataatagatggaaaacaacaatgatttta |
33883366 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 26854943 - 26854825
Alignment:
| Q |
17 |
taggattgagtagctttgtttgtttattagtgatcactgattagaatttatctttttatctggttttatagtgaatggaacctatgattgagtacgtagt |
116 |
Q |
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| T |
26854943 |
taggattgagtagttttgttggttttttagtgatcaatgattaaggtttatcttttcagttggttttat-gtgaatgg-acttaggattga----gtagt |
26854850 |
T |
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| Q |
117 |
tttgctgatttattagtgattagtg |
141 |
Q |
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| T |
26854849 |
tatgttggtttattagtgattagtg |
26854825 |
T |
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