View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_4 (Length: 481)
Name: NF17133_low_4
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 41 - 468
Target Start/End: Complemental strand, 29289806 - 29289380
Alignment:
| Q |
41 |
agtaatactttgcttagaccaagttgtgttgaaaatatatggcttaaaccataatgttttgttttatgaagttggattaattattatgatccaattttat |
140 |
Q |
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| T |
29289806 |
agtaatattttgcttacaccaagttgtgttgaaaatatatggcttaaaccataatgttttgttttatgaagttggattaattattatgttccaattttat |
29289707 |
T |
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| Q |
141 |
tttcatattctacaagttattcaacctcatctttgattcttacaacaccacaatcttattttctattcaaatattaaagtacatattcattgtcacatta |
240 |
Q |
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| T |
29289706 |
tttcatattctacaagttattcaacctcatctttgattcttacaacaccacaatcttattttctattcaaatgataaagtacatattcattgtcatatta |
29289607 |
T |
|
| Q |
241 |
tcaattgaaatataaaaattgaaatacaccatttgaactacacattcacattacataacatcaaaataaaaattcaacacatatagagccgttacatttt |
340 |
Q |
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| T |
29289606 |
tcaattgaaatataaaaattgaaatacaccatttgaactacacattcacattacataacatcaaaataaaaattcaacacatatagagccgttacatttt |
29289507 |
T |
|
| Q |
341 |
ggttttgatacattcctttttggcgtatcataccacnnnnnnntactcggctagctacaacgatccacttcaaccattccactttctactcttcatccaa |
440 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29289506 |
ggctttgatacattcctttttggcgtatcataccacaaaaaag-actcagctagctacaacgatccacttcaatcattccactttctactcttcatccaa |
29289408 |
T |
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| Q |
441 |
cagtttcagcttagacttatctttcttc |
468 |
Q |
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| T |
29289407 |
cagtttcagcttagacttatctttcttc |
29289380 |
T |
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