View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17133_low_7 (Length: 422)
Name: NF17133_low_7
Description: NF17133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17133_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Complemental strand, 7238776 - 7238379
Alignment:
| Q |
9 |
acatcatcacgcttaagacctcgtagaagaagtcctacattatcaccaccctaaaaatggacacataataattatccactagtccaaatagcgaggaaaa |
108 |
Q |
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| T |
7238776 |
acatcaccacgcttaagacctcgtagaagaagtcctacattatcaccaccctaaaaatggacacataataattatccactagtccaaatagcgaggaaaa |
7238677 |
T |
|
| Q |
109 |
agaaa--gtagaggatagtaaaggttatatgattttactgacttctcctttatccatagttttcttaaatgtttccacactagttacagtagtcttcaaa |
206 |
Q |
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| T |
7238676 |
aaaaaaagtagaggatagtaaaggttatatgattttactgacttctcctttatccatagttttcttaaatgtttccacactagttacagtagtcttcaaa |
7238577 |
T |
|
| Q |
207 |
ggttcaccctgcacataaaagcctgataaatacaaatacataaaccataaagcaaaaaactataagacatttaattttatgtgtacctgtttcaatccta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7238576 |
ggttcaccctgcacataaaagcctgataaatacaaatacataaaccataaagcaaaaaactataagacatttaattttatgtgtacctgtttcaatccta |
7238477 |
T |
|
| Q |
307 |
gtatctcaacctcttcaccaactttgatagtaccttgttcaacacgaccagtggcaacagttccacgccccttcacataaaccatagatagtggatgg |
404 |
Q |
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| T |
7238476 |
gtatctcaacctcttcaccaactttgatagtaccttgttcaacacgaccagtggcaacagttccacgccccttcacatgaaccatagatagtggatgg |
7238379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 32406458 - 32406856
Alignment:
| Q |
9 |
acatcatcacgcttaagacctcgtagaagaagtcctacattatcaccaccctaaaaatggacacataata----attatccactagtccaaatagcgagg |
104 |
Q |
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|||||| || ||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
32406458 |
acatcaccatgcttaagacctggtagaagaagtcctactttacaaccagcctaaaaatggacacataatattcaattatccactagtccaaattgcgagg |
32406557 |
T |
|
| Q |
105 |
aaaaagaaagtagaggatagta---aaggttatatgattttactgacttctcctttatccatagttttcttaaatgtttccacactagttacagtagtct |
201 |
Q |
| |
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||||| |||||||||||||||| || | |||||||||||||| ||||||||| |||||| | ||||||||| ||||||||| |||||||||||||| |
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| T |
32406558 |
aaaaa-aaagtagaggatagtagtaaatgctatatgattttactcacttctcctctatccacaagtttcttaaacatttccacaccagttacagtagtct |
32406656 |
T |
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| Q |
202 |
tcaaaggttcaccctgcacataaaagcctgataaatacaaatacataaaccataaagcaaaaaactataagacatttaattttatgtgtacctgtttcaa |
301 |
Q |
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|||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| |
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| T |
32406657 |
tcaaaggttcaccctgcatacaaaagactgataaatacaaaaacataaaccataaagcaaaaaactataagacttttaattttctgtttacctgtgtcag |
32406756 |
T |
|
| Q |
302 |
tcctagtatctcaacctcttcaccaactttgatagtaccttgttcaacacgaccagtggcaacagttccacgccccttcacataaaccatagatagtgga |
401 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
32406757 |
tcctagtatttcaacctcttcaccaactttgatagtaccttgttcaacatgaccagtggcaacagttccacgccccttcccataaaccgaagatagtgga |
32406856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 37597911 - 37597843
Alignment:
| Q |
311 |
ctcaacctcttcaccaactttgatagtaccttgttcaacacgaccagtggcaacagttccacgcccctt |
379 |
Q |
| |
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|||||| || ||||||| |||||| | |||||||||||||||||||| ||||| ||||| || ||||| |
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| T |
37597911 |
ctcaacttcatcaccaattttgatgattccttgttcaacacgaccagtagcaactgttcctcgtccctt |
37597843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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