View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_107 (Length: 240)
Name: NF17134_high_107
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_107 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 24880972 - 24881174
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24880972 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
24881071 |
T |
|
| Q |
117 |
gatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaatagtaatgtacatgctaaaaattgagtgaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24881072 |
gatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaatagtaatgtacatgctaaaaattgagtgaac |
24881171 |
T |
|
| Q |
217 |
aat |
219 |
Q |
| |
|
||| |
|
|
| T |
24881172 |
aat |
24881174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 24876470 - 24876638
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876470 |
aatacagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
24876569 |
T |
|
| Q |
117 |
gatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24876570 |
gatgaacttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaa |
24876638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 24886307 - 24886392
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24886307 |
aatacagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa |
24886392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 24876655 - 24876689
Alignment:
| Q |
185 |
atagtaatgtacatgctaaaaattgagtgaacaat |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24876655 |
atagtaatgtatatgctaaaaattgagtgaacaat |
24876689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 46461645 - 46461477
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46461645 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatgaaaaatgtgtaagaagaaa |
46461546 |
T |
|
| Q |
117 |
gatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46461545 |
gatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
46461477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 46454245 - 46454076
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga-aaaatgtctaagaagaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
46454245 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatgaaaaaatgtctaaaaagaa |
46454146 |
T |
|
| Q |
116 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454145 |
agatgaacttctaataaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
46454076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 46454055 - 46454025
Alignment:
| Q |
189 |
taatgtacatgctaaaaattgagtgaacaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
46454055 |
taatgtacatgctaaaaattgagtgaacaat |
46454025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 14087709 - 14087878
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaa-atgtctaagaagaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14087709 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatgaaaaaatgtctaagaagaa |
14087808 |
T |
|
| Q |
116 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14087809 |
agatgaacttctaattaataaattcactttgttacactctacttgttttattgtgatatctaaattacaa |
14087878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 14092241 - 14092410
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatg-aaaaatgtctaagaagaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14092241 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatgaaaaaatgtctaaaaagaa |
14092340 |
T |
|
| Q |
116 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14092341 |
agatgaacttctaataaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
14092410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 14087895 - 14087929
Alignment:
| Q |
185 |
atagtaatgtacatgctaaaaattgagtgaacaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14087895 |
atagtaatgtacatgctaaaaattgagtgaacaat |
14087929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 14092431 - 14092461
Alignment:
| Q |
189 |
taatgtacatgctaaaaattgagtgaacaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14092431 |
taatgtacatgctaaaaattgagtgaacaat |
14092461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 9955445 - 9955277
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9955445 |
aatatagacttctaataataatatgaactatgtactcattaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaa |
9955346 |
T |
|
| Q |
117 |
gatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9955345 |
ggtgaacttctaattaataaattcactttgttacactctacttgtttttttgtgatatctaaattacaa |
9955277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 9950416 - 9950289
Alignment:
| Q |
58 |
aagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctac |
157 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9950416 |
aagttgaacacgaatgtagttagaacaataaatttgtatgaaaaatgtctaagaagaaagatgaacttctaattaataaattcactatgttacactctac |
9950317 |
T |
|
| Q |
158 |
ttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9950316 |
ttgttttgttgtgatatctaaattacaa |
9950289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 32213508 - 32213674
Alignment:
| Q |
23 |
gacttctaataataatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaatgtctaagaagaaaga |
118 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32213508 |
gacttctaataatgatatgaaatatgcacttactaaagctgaacacgaaataacttagctagaacaataaacttgtatgaaaaatgtctaagaagaaaga |
32213607 |
T |
|
| Q |
119 |
tgaacttctaattaataaattcactttgttacactctacttg-ttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
32213608 |
taaacttctaattaataaactcac-ttgttacactctatttgtttttgttgtgatatctaaaatacaa |
32213674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 32213385 - 32213273
Alignment:
| Q |
36 |
aatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaatgtctaagaagaaagatgaacttctaatt |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32213385 |
aatatgaaatatgcactcactaaagttgaacacgaaataacatagctagaacaataaacttgtatgaaaaatgtctaagaagaaaaatgaacttctaatt |
32213286 |
T |
|
| Q |
132 |
aataaattcactt |
144 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
32213285 |
aataaactcactt |
32213273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 9955260 - 9955226
Alignment:
| Q |
185 |
atagtaatgtacatgctaaaaattgagtgaacaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9955260 |
atagtaatgtacatgctaaaaattgagtgaacaat |
9955226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 33681927 - 33681761
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa-tgtctaagaagaa |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33681927 |
aatatagacttctaataata---tgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaa |
33681831 |
T |
|
| Q |
116 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681830 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
33681761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 33698984 - 33698818
Alignment:
| Q |
17 |
aatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa-tgtctaagaagaa |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33698984 |
aatatagacttctaataata---tgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaa |
33698888 |
T |
|
| Q |
116 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698887 |
agatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaa |
33698818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 9360905 - 9361021
Alignment:
| Q |
31 |
ataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaagatgaacttctaat |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9360905 |
ataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatgaaaaatgtctaagaagaaagatgaacttctaat |
9361004 |
T |
|
| Q |
131 |
taataaattcactttgt |
147 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9361005 |
taataaattcactttgt |
9361021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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