View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_112 (Length: 238)
Name: NF17134_high_112
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_112 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15265861 - 15265646
Alignment:
| Q |
1 |
actccttataattgtttaaatgatgatcgatctatgacgttgttttttgtcaagtaacctagttgctagaaattcaccttttaaaaaggaataaatgaag |
100 |
Q |
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| T |
15265861 |
actccttataattgtttaaatgatgatcgatctatgacgttgtcttttgtcaagtaacctaattgctagaaattcaccttttaaagaggaataaatgaag |
15265762 |
T |
|
| Q |
101 |
agttcaagttcgaacccaaacctctacatatataataaaatatttctatcaattgagataaactcagaggaactgtccatgaagttgttgctaccttata |
200 |
Q |
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| T |
15265761 |
agttccggtttgaacccaaacctctacatatataataaaatatttctatcaattgagataaaatcagagg------ccatgacgttgttgctaccttata |
15265668 |
T |
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| Q |
201 |
attgtttttatcaccatgttta |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
15265667 |
attgtttttatcaccatgttta |
15265646 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 4254276 - 4254185
Alignment:
| Q |
43 |
ttttttgtcaagtaacctagttgctagaaattcaccttttaaaaaggaataaatgaagagttc-aagttcgaacccaaacctctacatatat |
133 |
Q |
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| T |
4254276 |
ttttttgtcaaataatctagtgattagaagttcacctttttaatatgaataagtgaggtgttccaagttcgaaccccaacctctacatatat |
4254185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 28128355 - 28128314
Alignment:
| Q |
43 |
ttttttgtcaagtaacctagttgctagaaattcaccttttaa |
84 |
Q |
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| T |
28128355 |
ttttttgtcaagtaacctagtggctagaaatttacctcttaa |
28128314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 32635264 - 32635223
Alignment:
| Q |
43 |
ttttttgtcaagtaacctagttgctagaaattcaccttttaa |
84 |
Q |
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| T |
32635264 |
ttttttgtcaagtagcctagtggctagaaattcacctcttaa |
32635223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 21882164 - 21882202
Alignment:
| Q |
43 |
ttttttgtcaagtaacctagttgctagaaattcaccttt |
81 |
Q |
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| T |
21882164 |
ttttttgtcaagtagcctagtagctagaaattcaccttt |
21882202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 12832674 - 12832633
Alignment:
| Q |
43 |
ttttttgtcaagtaacctagttgctagaaattcaccttttaa |
84 |
Q |
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|||||||||||||| |||||| | |||||||||||||||||| |
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| T |
12832674 |
ttttttgtcaagtagcctagtggttagaaattcaccttttaa |
12832633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 42024 - 41988
Alignment:
| Q |
43 |
ttttttgtcaagtaacctagttgctagaaattcacct |
79 |
Q |
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| T |
42024 |
ttttttgtcaagtagcctagtggctagaaattcacct |
41988 |
T |
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