View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_114 (Length: 237)
Name: NF17134_high_114
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_114 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 28881467 - 28881265
Alignment:
| Q |
20 |
aagaaggtagtgtaaaaacatattttaaaatggactaatgttaaaaaagataaagttcaggaataaatcgttgatttagtcctatgaagttgtacgacat |
119 |
Q |
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| T |
28881467 |
aagaaggtaatgtaaaaacatatgttaaaatggactaatgttaaaaaagataaaattcaggaataaatcgttgatttagtcctatgaagctgtacaacat |
28881368 |
T |
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| Q |
120 |
tgtcaatttaacccataaaattgttaatattttaaaatagttcttgaactttgaagtctttgatcatgttggtcgttttggaatttagtccttgaaattt |
219 |
Q |
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| T |
28881367 |
tgtcaatttaactcataaaattgttaatatttcaaaatagttcttgaactttgaagtctttgatcatgttggtcgttttggaatttagtccttgaaattt |
28881268 |
T |
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| Q |
220 |
tct |
222 |
Q |
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||| |
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| T |
28881267 |
tct |
28881265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 28886247 - 28886044
Alignment:
| Q |
21 |
agaaggtagtgtaaaaacatatttt---aaaatggactaatgttaaaaaagataaagttcaggaataaatcgttgatttagtcctatgaagttgtacgac |
117 |
Q |
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||||||||| ||||||||||||| | |||||||||||| |||||||| | |||||| |||| | |||| | |||||||||| | ||||||||||||| |
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| T |
28886247 |
agaaggtagagtaaaaacatattattataaaatggactaaagttaaaaacaa-aaagtttaggactgaatcatcgatttagtcccacgaagttgtacgac |
28886149 |
T |
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| Q |
118 |
attgtcaatttaacccataaaattgttaatattttaaaatagttcttgaactttgaagtctttgatcatgttggtcgttttggaatttagtccttgaaat |
217 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||| |
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| T |
28886148 |
attgtcaatttaacctataaaattgttaatatttcaaaatagtccttgaacattgaagtctttgatcatattgatcgttttggaatttagttcttgaaat |
28886049 |
T |
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| Q |
218 |
tttct |
222 |
Q |
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||||| |
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| T |
28886048 |
tttct |
28886044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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