View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_117 (Length: 237)
Name: NF17134_high_117
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_117 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45172928 - 45173136
Alignment:
| Q |
1 |
taaattgtgtggtcatgatatttgatgctctagtttttattatcaagaacataaggtgcagaatatatatgttgaaattcggtgttaaatctaaaacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45172928 |
taaattgtgtggtcatgatatttgatgctctagtttttattatcaagaacataaggtgcagaatatatatgtcgaaattcggtgttaaatctaaaac--- |
45173024 |
T |
|
| Q |
101 |
atgataaactttatgataagtgtttaatctgataatattgttacctcttcatgaattaagtctacaaaatgtcatagtaacatacgaactcaacgtatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45173025 |
---------tttatgataagtgtttaatctgataatattgttacctcttcatgaattaagtctacaaaatgtcatagtaacatacgaactcaacgtatca |
45173115 |
T |
|
| Q |
201 |
tgtccactatcatatattagt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45173116 |
tgtccactatcatatattagt |
45173136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University