View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_123 (Length: 231)
Name: NF17134_high_123
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_123 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 36066667 - 36066863
Alignment:
| Q |
16 |
agaagataagaatgtgccaatcgctttctcatcattattttcatcttctcctaagttttaatgaatgactctccataccttatttgatgatttaatccca |
115 |
Q |
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| T |
36066667 |
agaagataagaatgtgccaatcgctttctcatcattgttttcatcttctcctaagttttaatgaatgactctccataacttatttgatgatttaatccca |
36066766 |
T |
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| Q |
116 |
ccaatgcataaccttttaaatcatggtctgcaacctgcacttcttgaacattagtataggttttacaagcaaaaattgtttaatttttgccttccttac |
214 |
Q |
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| T |
36066767 |
ccaataaataatcttttaaatcatggtc--caacctgcacttcttgaacattagtataggttttacaagcaaaaattgtttaatttttgtcttccttac |
36066863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 29024082 - 29024254
Alignment:
| Q |
41 |
ttctcatcattattttcatcttctcctaagttttaatgaatgactctccataccttatttg------atgatttaatcccacca-----atgcataacct |
129 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||| |||||| |||| ||||| |||||||| || |
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| T |
29024082 |
ttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacctttttttttttttatgattcaatctcaccatatcaatgcataatct |
29024181 |
T |
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| Q |
130 |
tttaaatcatggtctgcaacctgcacttcttgaacattagtataggttttacaagcaaaaattgtttaatttt |
202 |
Q |
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|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024182 |
tttaaatcctggtctacaaccttcacttcttgaacattagtataggttttacaagcaaaaattgtttaatttt |
29024254 |
T |
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