View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_127 (Length: 227)
Name: NF17134_high_127
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_127 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45172579 - 45172805
Alignment:
| Q |
1 |
tagagaaaccggcagtactaatcatacttatatttacaatcacccttcaatgatgatgagagagttggtactttcaatggcaatggattggcgtggatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45172579 |
tagagaaaccggcagtactaatcatacttatattgacaatcacccttcaatgatgatgagagagttggtactttcaatggcaatggattggcgtggatgt |
45172678 |
T |
|
| Q |
101 |
caatatctgcaggcgaagatcgagaagggcaacccggcagatgttgagtttatcctctcaatcgtgaaggatcatgtacaccagctaatgacacacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45172679 |
caatatctgcaggcgaagatcgagaagggcaacccggcagatgttgagtttatcctctcaatcgtgaaggatcatgtacaccagctaatgacacacaaca |
45172778 |
T |
|
| Q |
201 |
acaactacttgattaaaaagatttttc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45172779 |
acaactacttgattaaaaagatttttc |
45172805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University